PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10151-10200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | homalt | 99.7609 | 99.6093 | 99.9129 | 63.7805 | 9178 | 36 | 9178 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | * | 99.2907 | 98.8332 | 99.7525 | 64.4232 | 24988 | 295 | 24988 | 62 | 24 | 38.7097 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | het | 99.0340 | 98.4126 | 99.6632 | 64.7264 | 15685 | 253 | 15685 | 53 | 17 | 32.0755 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | homalt | 99.7631 | 99.6130 | 99.9137 | 63.7862 | 9266 | 36 | 9266 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | * | 98.6916 | 97.8284 | 99.5702 | 72.2163 | 6487 | 144 | 6487 | 28 | 13 | 46.4286 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | het | 98.2879 | 97.1825 | 99.4189 | 73.8528 | 4277 | 124 | 4277 | 25 | 11 | 44.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | homalt | 99.5256 | 99.1896 | 99.8640 | 68.2316 | 2203 | 18 | 2203 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | * | 99.1238 | 98.5327 | 99.7220 | 67.2834 | 15781 | 235 | 15781 | 44 | 22 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | het | 98.8001 | 97.9854 | 99.6285 | 68.0340 | 9922 | 204 | 9922 | 37 | 16 | 43.2432 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 79.1667 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | homalt | 99.7180 | 99.5563 | 99.8802 | 65.8321 | 5834 | 26 | 5834 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | * | 99.1430 | 98.5687 | 99.7239 | 69.3029 | 16253 | 236 | 16253 | 45 | 22 | 48.8889 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | het | 98.8271 | 98.0368 | 99.6302 | 69.6751 | 10237 | 205 | 10237 | 38 | 16 | 42.1053 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3944 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | homalt | 99.7253 | 99.5679 | 99.8833 | 68.5442 | 5991 | 26 | 5991 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | * | 99.1365 | 98.5592 | 99.7206 | 69.3660 | 16417 | 240 | 16417 | 46 | 22 | 47.8261 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | het | 98.8154 | 98.0195 | 99.6244 | 69.7483 | 10344 | 209 | 10344 | 39 | 16 | 41.0256 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.5175 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | homalt | 99.7279 | 99.5719 | 99.8844 | 68.5879 | 6048 | 26 | 6048 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | * | 98.3535 | 97.3167 | 99.4126 | 77.2836 | 4062 | 112 | 4062 | 24 | 11 | 45.8333 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | het | 97.8428 | 96.5178 | 99.2046 | 78.4007 | 2744 | 99 | 2744 | 22 | 10 | 45.4545 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | homalt | 99.4329 | 99.0211 | 99.8481 | 74.3625 | 1315 | 13 | 1315 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | * | 98.9384 | 98.2221 | 99.6652 | 71.6791 | 10718 | 194 | 10718 | 36 | 17 | 47.2222 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | het | 98.5385 | 97.5525 | 99.5446 | 72.4747 | 6776 | 170 | 6776 | 31 | 13 | 41.9355 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | homalt | 99.6826 | 99.4932 | 99.8728 | 70.1019 | 3926 | 20 | 3926 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | * | 98.9623 | 98.2651 | 99.6695 | 73.4684 | 11158 | 197 | 11158 | 37 | 17 | 45.9459 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | het | 98.5727 | 97.6145 | 99.5500 | 73.8403 | 7079 | 173 | 7079 | 32 | 13 | 40.6250 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.7143 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | homalt | 99.6933 | 99.5102 | 99.8771 | 72.6980 | 4063 | 20 | 4063 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | * | 98.9668 | 98.2699 | 99.6737 | 73.4886 | 11303 | 199 | 11303 | 37 | 17 | 45.9459 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | het | 98.5776 | 97.6184 | 99.5559 | 73.8732 | 7173 | 175 | 7173 | 32 | 13 | 40.6250 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.8407 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | homalt | 99.6971 | 99.5162 | 99.8786 | 72.6929 | 4114 | 20 | 4114 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | * | 97.2074 | 95.5556 | 98.9175 | 91.4259 | 731 | 34 | 731 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | het | 96.6071 | 94.5804 | 98.7226 | 91.3140 | 541 | 31 | 541 | 7 | 3 | 42.8571 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | homalt | 98.9583 | 98.4456 | 99.4764 | 91.6630 | 190 | 3 | 190 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | * | 97.8332 | 96.3733 | 99.3380 | 86.1787 | 2551 | 96 | 2551 | 17 | 10 | 58.8235 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | het | 97.1755 | 95.2994 | 99.1269 | 86.3845 | 1703 | 84 | 1703 | 15 | 8 | 53.3333 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.4545 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.2958 | 98.8318 | 99.7642 | 85.6708 | 846 | 10 | 846 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | * | 97.9240 | 96.5649 | 99.3219 | 86.9151 | 2783 | 99 | 2783 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | het | 97.2703 | 95.5155 | 99.0909 | 86.8763 | 1853 | 87 | 1853 | 17 | 8 | 47.0588 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | homalt | 99.3569 | 98.9328 | 99.7847 | 86.9321 | 927 | 10 | 927 | 2 | 2 | 100.0000 | |