PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10001-10050 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | * | 98.3102 | 97.0048 | 99.6513 | 87.8762 | 4858 | 150 | 4858 | 17 | 9 | 52.9412 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | het | 97.7952 | 96.0971 | 99.5543 | 88.3585 | 3127 | 127 | 3127 | 14 | 6 | 42.8571 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | homalt | 99.3103 | 98.7993 | 99.8267 | 86.8804 | 1728 | 21 | 1728 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | * | 98.3031 | 97.0055 | 99.6358 | 87.9552 | 4924 | 152 | 4924 | 18 | 9 | 50.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | het | 97.7791 | 96.0897 | 99.5290 | 88.4572 | 3170 | 129 | 3170 | 15 | 6 | 40.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | homalt | 99.3193 | 98.8149 | 99.8290 | 86.9124 | 1751 | 21 | 1751 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | * | 99.5376 | 99.2028 | 99.8746 | 51.9628 | 99555 | 800 | 99557 | 125 | 60 | 48.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | het | 99.3687 | 98.9067 | 99.8350 | 52.2716 | 61700 | 682 | 61701 | 102 | 39 | 38.2353 | |
| ndellapenna-hhga | SNP | ti | map_siren | hetalt | 92.5926 | 87.7193 | 98.0392 | 75.4808 | 50 | 7 | 50 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | homalt | 99.8244 | 99.7072 | 99.9418 | 51.3860 | 37805 | 111 | 37806 | 22 | 20 | 90.9091 | |
| ndellapenna-hhga | SNP | ti | segdup | * | 99.5651 | 99.6059 | 99.5244 | 88.6856 | 19460 | 77 | 19460 | 93 | 33 | 35.4839 | |
| ndellapenna-hhga | SNP | ti | segdup | het | 99.4554 | 99.4264 | 99.4843 | 88.9326 | 11961 | 69 | 11961 | 62 | 2 | 3.2258 | |
| ndellapenna-hhga | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0698 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | segdup | homalt | 99.7406 | 99.8934 | 99.5882 | 88.2312 | 7497 | 8 | 7497 | 31 | 31 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 45.8599 | 85 | 0 | 85 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 45.6790 | 44 | 0 | 44 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 46.0526 | 41 | 0 | 41 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | * | * | 99.8629 | 99.7865 | 99.9395 | 20.8763 | 967620 | 2070 | 967646 | 586 | 175 | 29.8635 | |
| ndellapenna-hhga | SNP | tv | * | het | 99.8309 | 99.7335 | 99.9285 | 20.7977 | 590119 | 1577 | 590138 | 422 | 45 | 10.6635 | |
| ndellapenna-hhga | SNP | tv | * | hetalt | 98.9643 | 98.7371 | 99.1926 | 47.1341 | 860 | 11 | 860 | 7 | 7 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | * | homalt | 99.9152 | 99.8722 | 99.9583 | 20.9089 | 376641 | 482 | 376648 | 157 | 123 | 78.3439 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | * | 99.7569 | 99.5881 | 99.9262 | 21.8704 | 245138 | 1014 | 245164 | 181 | 131 | 72.3757 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | het | 99.7024 | 99.4520 | 99.9540 | 21.1664 | 149905 | 826 | 149923 | 69 | 30 | 43.4783 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | hetalt | 98.7097 | 98.7097 | 98.7097 | 40.9524 | 306 | 4 | 306 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | homalt | 99.8464 | 99.8065 | 99.8864 | 22.8760 | 94927 | 184 | 94935 | 108 | 97 | 89.8148 | |
| ndellapenna-hhga | SNP | tv | HG002compoundhet | * | 98.0516 | 97.2879 | 98.8274 | 47.0684 | 8681 | 242 | 8681 | 103 | 93 | 90.2913 | |
| ndellapenna-hhga | SNP | tv | HG002compoundhet | het | 97.5455 | 95.6773 | 99.4882 | 51.9512 | 4471 | 202 | 4471 | 23 | 15 | 65.2174 | |
| ndellapenna-hhga | SNP | tv | HG002compoundhet | hetalt | 99.3579 | 98.7239 | 100.0000 | 23.5400 | 851 | 11 | 851 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | HG002compoundhet | homalt | 98.4034 | 99.1440 | 97.6737 | 43.8897 | 3359 | 29 | 3359 | 80 | 78 | 97.5000 | |
| ndellapenna-hhga | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | func_cds | * | 99.9314 | 99.9771 | 99.8857 | 28.0901 | 4370 | 1 | 4370 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | func_cds | het | 99.8872 | 99.9624 | 99.8121 | 28.8312 | 2656 | 1 | 2656 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.5517 | 1704 | 0 | 1704 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.8073 | 97.0976 | 98.5274 | 67.7670 | 1472 | 44 | 1472 | 22 | 11 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.4054 | 96.4718 | 98.3573 | 68.7720 | 957 | 35 | 958 | 16 | 6 | 37.5000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.5635 | 98.2824 | 98.8462 | 65.4025 | 515 | 9 | 514 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||