PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9301-9350 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | * | het | 92.2712 | 93.4473 | 91.1244 | 67.5886 | 2952 | 207 | 3193 | 311 | 263 | 84.5659 | |
| ndellapenna-hhga | INDEL | D16_PLUS | * | hetalt | 63.8503 | 47.1288 | 98.9624 | 49.3430 | 911 | 1022 | 763 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | * | homalt | 92.1150 | 94.2080 | 90.1130 | 60.6404 | 1594 | 98 | 1595 | 175 | 104 | 59.4286 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | * | 84.9902 | 80.5843 | 89.9058 | 63.0348 | 1324 | 319 | 1336 | 150 | 106 | 70.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | het | 89.4513 | 85.6369 | 93.6214 | 62.1643 | 948 | 159 | 910 | 62 | 44 | 70.9677 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | hetalt | 58.9170 | 42.1053 | 98.0769 | 57.6087 | 104 | 143 | 153 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | homalt | 84.2511 | 94.1176 | 76.2570 | 66.9437 | 272 | 17 | 273 | 85 | 60 | 70.5882 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | * | 63.8133 | 53.4814 | 79.0931 | 40.7537 | 1252 | 1089 | 1343 | 355 | 284 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | het | 77.8675 | 83.4568 | 72.9798 | 46.7026 | 338 | 67 | 578 | 214 | 199 | 92.9907 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | hetalt | 63.9739 | 47.1473 | 99.4764 | 32.8056 | 909 | 1019 | 760 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.6667 | 62.5000 | 3.5211 | 41.5638 | 5 | 3 | 5 | 137 | 82 | 59.8540 | |
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.6877 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 98.9209 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 12 | 0 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 8 | 0 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.3565 | 68.2801 | 84.0693 | 69.0324 | 1453 | 675 | 1504 | 285 | 237 | 83.1579 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.8661 | 82.5564 | 77.3455 | 75.6274 | 549 | 116 | 676 | 198 | 177 | 89.3939 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 65.9704 | 49.6410 | 98.3092 | 51.1216 | 484 | 491 | 407 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 85.0366 | 86.0656 | 84.0319 | 62.7232 | 420 | 68 | 421 | 80 | 56 | 70.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.5075 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.1132 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 82.5216 | 75.5967 | 90.8430 | 68.5420 | 2692 | 869 | 2748 | 277 | 196 | 70.7581 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.8852 | 91.7343 | 90.0517 | 74.0181 | 1243 | 112 | 1394 | 154 | 131 | 85.0649 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 61.4859 | 44.5131 | 99.3789 | 49.1043 | 576 | 718 | 480 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 91.6601 | 95.7237 | 87.9276 | 63.3075 | 873 | 39 | 874 | 120 | 63 | 52.5000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 80.5286 | 73.7548 | 88.6726 | 69.8081 | 3687 | 1312 | 3781 | 483 | 366 | 75.7764 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.6321 | 89.4447 | 85.8915 | 75.4124 | 1627 | 192 | 1869 | 307 | 263 | 85.6678 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 63.7991 | 47.0741 | 98.9583 | 49.3404 | 909 | 1022 | 760 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 89.6468 | 92.1537 | 87.2727 | 64.8656 | 1151 | 98 | 1152 | 168 | 98 | 58.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 81.9603 | 79.1667 | 84.9582 | 78.0562 | 304 | 80 | 305 | 54 | 43 | 79.6296 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.4101 | 90.0498 | 77.6824 | 80.0684 | 181 | 20 | 181 | 52 | 41 | 78.8462 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.8235 | 45.4545 | 83.3333 | 84.2105 | 5 | 6 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 81.1020 | 68.6047 | 99.1667 | 72.0280 | 118 | 54 | 119 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.4000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.9592 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.9959 | 91.7476 | 94.2786 | 67.1300 | 756 | 68 | 758 | 46 | 41 | 89.1304 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.5800 | 96.8468 | 90.5263 | 70.9302 | 430 | 14 | 430 | 45 | 40 | 88.8889 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.8693 | 52.6316 | 91.6667 | 69.2308 | 10 | 9 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.3530 | 87.5346 | 100.0000 | 58.9909 | 316 | 45 | 317 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2646 | 97.5659 | 98.9733 | 55.4437 | 481 | 12 | 482 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.7142 | 99.2593 | 98.1752 | 59.8829 | 268 | 2 | 269 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 53.8462 | 6 | 6 | 6 | 0 | 0 | ||