PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
anovak-vgINDELC1_5lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15map_l250_m2_e0hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
24.6377
0.0000
0.0000
1752000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
16.1412
0.0000
0.0000
128665000
anovak-vgINDELI16_PLUSmap_l150_m2_e0hetalt
0.0000
50.0000
0.0000
0.0000
11000
anovak-vgINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
9.6226
0.0000
0.0000
51479000
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtimap_l125_m2_e0hetalt
0.0000
33.3333
0.0000
0.0000
816000
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC1_5lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15map_l250_m2_e0homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
86.3781
85.6589
87.1094
66.0027
221372233321
63.6364
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
10.9091
6.2500
42.8571
61.9565
12180152016
80.0000
anovak-vgINDELI16_PLUSmap_l150_m2_e0homalt
33.3333
33.3333
33.3333
76.0000
12243
75.0000
anovak-vgINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
47.6231
55.9322
41.4634
53.9326
3326344835
72.9167
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
74.0741
66.6667
83.3333
95.0000
1051021
50.0000
anovak-vgSNPtimap_l125_m2_e0homalt
89.9353
82.1183
99.3971
67.3107
9327203192335651
91.0714
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
anovak-vgINDELC1_5map_l100_m0_e0*
0.0000
0.0000
50.0000
98.4496
00110
0.0000
anovak-vgINDELC6_15map_l250_m2_e1*
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
63.1579
60.0000
66.6667
99.3066
64633
100.0000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELI16_PLUSmap_l150_m2_e1*
23.5294
18.1818
33.3333
81.8182
29243
75.0000
anovak-vgINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
97.9194
98.3001
97.5417
56.1712
1688529217260435173
39.7701
anovak-vgSNPtimap_l125_m2_e1*
81.5574
87.0097
76.7480
75.9636
2659839712637679911774
22.2000
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
anovak-vgINDELC1_5map_l100_m0_e0het
0.0000
0.0000
50.0000
98.2301
00110
0.0000
anovak-vgINDELC6_15map_l250_m2_e1het
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
57.1429
80.0000
99.3990
43411
100.0000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
anovak-vgINDELI16_PLUSmap_l150_m2_e1het
0.0000
100.0000
06000
anovak-vgINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
97.5583
98.0061
97.1145
57.2508
1086322111039328130
39.6341
anovak-vgSNPtimap_l125_m2_e1het
77.5988
89.9303
68.2413
78.1425
1716519221704679331721
21.6942
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC1_5map_l100_m0_e0hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15map_l250_m2_e1hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELI16_PLUSmap_l150_m2_e1hetalt
0.0000
50.0000
0.0000
0.0000
11000
anovak-vgINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgSNPtimap_l125_m2_e1hetalt
0.0000
33.3333
0.0000
0.0000
816000