PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
anovak-vgINDELI16_PLUSmap_l150_m1_e0*
25.0000
18.1818
40.0000
78.2609
29233
100.0000
anovak-vgINDELI6_15func_cds*
63.7892
60.4651
67.5000
37.5000
2617271310
76.9231
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50*
92.1861
94.9340
89.5928
65.6359
920149198571145571
49.8690
anovak-vgSNPtimap_l125_m1_e0*
81.2273
86.8110
76.3184
74.3923
2546638692525378361746
22.2818
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgINDELC1_5lowcmp_SimpleRepeat_triTR_51to200het
0.0000
100.0000
00000
anovak-vgINDELC6_15map_l250_m1_e0het
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
71.0827
79.4287
64.3238
52.6876
1092728301434179545860
73.6736
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
69.3130
73.8369
65.3114
41.5571
12224331510802609
75.9352
anovak-vgINDELI16_PLUSmap_l150_m1_e0het
0.0000
100.0000
06000
anovak-vgINDELI6_15func_cdshet
56.0784
45.8333
72.2222
40.0000
11131353
60.0000
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50het
90.7742
93.8101
87.9287
67.8048
58503866359873348
39.8625
anovak-vgSNPtimap_l125_m1_e0het
77.2287
89.8883
67.6948
76.8145
1641918471630777821697
21.8067
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15map_l250_m1_e0hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
28.3070
0.0000
0.0000
26306661000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
31.9797
0.0000
0.0000
378804000
anovak-vgINDELI16_PLUSmap_l150_m1_e0hetalt
0.0000
50.0000
0.0000
0.0000
11000
anovak-vgINDELI6_15func_cdshetalt
0.0000
25.0000
0.0000
0.0000
13000
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
10000
anovak-vgSNPtimap_l125_m1_e0hetalt
0.0000
33.3333
0.0000
0.0000
816000
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC1_5lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15map_l250_m1_e0homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
68.8773
63.7081
74.9595
62.4506
53263034555018541409
75.9978
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
63.7080
51.7647
82.8154
52.5585
4404104539466
70.2128
anovak-vgINDELI16_PLUSmap_l150_m1_e0homalt
36.3636
33.3333
40.0000
72.2222
12233
100.0000
anovak-vgINDELI6_15func_cdshomalt
75.6757
93.3333
63.6364
35.2941
1411487
87.5000
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
94.8271
96.9609
92.7851
60.5360
33501053498272223
81.9853
anovak-vgSNPtimap_l125_m1_e0homalt
89.7681
81.8379
99.4000
64.4522
9039200689465449
90.7407
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgINDELC1_5lowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15map_l250_m2_e0*
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
82.0253
80.8399
83.2461
66.0293
61614663612870
54.6875
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
27.0890
20.6844
39.2387
39.7707
2721043268415363
87.4699
anovak-vgINDELI16_PLUSmap_l150_m2_e0*
23.5294
18.1818
33.3333
81.8182
29243
75.0000
anovak-vgINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
23.7087
15.9091
46.5116
54.5317
133703140161125
77.6398
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_51to200*
66.5816
64.2857
69.0476
95.7704
271529138
61.5385
anovak-vgSNPtimap_l125_m2_e0*
81.4788
86.9291
76.6717
75.9478
2630339552608679371770
22.3006
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgINDELC1_5lowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15map_l250_m2_e0het
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
84.0047
86.8966
81.2992
66.0428
378574139549
51.5789
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
39.5158
40.0000
39.0432
37.8119
132198253395347
87.8481
anovak-vgINDELI16_PLUSmap_l150_m2_e0het
0.0000
100.0000
06000
anovak-vgINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
28.1418
19.8381
48.4018
54.7521
4919810611390
79.6460
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_51to200het
63.1476
62.9630
63.3333
96.0159
171019117
63.6364
anovak-vgSNPtimap_l125_m2_e0het
77.5170
89.8919
68.1370
78.1191
1696819081685378811719
21.8120
anovak-vgINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000