PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85801-85850 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | het | 81.4578 | 81.6667 | 81.2500 | 89.3155 | 49 | 11 | 52 | 12 | 10 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 21.0526 | 0.0000 | 0.0000 | 4 | 15 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 88.7640 | 18 | 6 | 18 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | * | 69.8276 | 62.7907 | 78.6408 | 85.3172 | 162 | 96 | 162 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | het | 76.0494 | 78.5714 | 73.6842 | 85.5238 | 99 | 27 | 112 | 40 | 23 | 57.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 22.0588 | 0.0000 | 0.0000 | 15 | 53 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | homalt | 82.8729 | 75.0000 | 92.5926 | 84.7025 | 48 | 16 | 50 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | * | 69.8453 | 62.5000 | 79.1469 | 85.8199 | 165 | 99 | 167 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | het | 75.7043 | 77.0992 | 74.3590 | 85.9586 | 101 | 30 | 116 | 40 | 23 | 57.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 22.0588 | 0.0000 | 0.0000 | 15 | 53 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.1614 | 75.3846 | 92.7273 | 85.4111 | 49 | 16 | 51 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | * | 69.0673 | 61.0909 | 79.4393 | 85.8746 | 168 | 107 | 170 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | het | 75.1170 | 75.5556 | 74.6835 | 86.0301 | 102 | 33 | 118 | 40 | 23 | 57.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 21.9178 | 0.0000 | 0.0000 | 16 | 57 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.7498 | 74.6269 | 92.8571 | 85.4167 | 50 | 17 | 52 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | * | 77.7114 | 74.4681 | 81.2500 | 92.1824 | 35 | 12 | 39 | 9 | 7 | 77.7778 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | het | 80.1909 | 82.7586 | 77.7778 | 92.4051 | 24 | 5 | 28 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 91.4286 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | * | 75.8631 | 73.5043 | 78.3784 | 88.8554 | 86 | 31 | 87 | 24 | 15 | 62.5000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | het | 77.8285 | 81.2500 | 74.6835 | 89.5641 | 52 | 12 | 59 | 20 | 11 | 55.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 31.5789 | 0.0000 | 0.0000 | 6 | 13 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | homalt | 84.8485 | 82.3529 | 87.5000 | 86.6109 | 28 | 6 | 28 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | * | 76.3127 | 73.8095 | 78.9916 | 88.9713 | 93 | 33 | 94 | 25 | 15 | 60.0000 | |
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 88.6878 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 88.1517 | 0 | 0 | 0 | 25 | 3 | 12.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 83.1933 | 0 | 0 | 0 | 20 | 2 | 10.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 82.6087 | 0 | 0 | 0 | 20 | 2 | 10.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 90.6977 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 90.4762 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||