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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85751-85800 / 86044 show all
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
55.0422
49.2827
62.3260
55.4966
116812021254758535
70.5805
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
48.9297
42.6581
57.3634
45.6299
63078478646648063764
78.3188
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
60.4452
67.0715
55.0104
41.9298
29821464475438883114
80.0926
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
24.0312
0.0000
0.0000
17245450000
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
56.9297
50.5845
65.0951
55.0427
160115641712918650
70.8061
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
51.2305
44.8305
59.7622
50.2699
79229749809354494223
77.5005
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
62.0445
67.3110
57.5423
47.2192
39351911594743883469
79.0565
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
24.4075
0.0000
0.0000
19676092000
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
59.5457
53.6378
66.9161
58.0784
2020174621461061754
71.0650
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
49.2492
43.6456
56.5037
39.7780
41285330423132572430
74.6085
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
59.9042
65.3860
55.2704
39.0162
1787946301524401867
76.5164
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
25.3353
0.0000
0.0000
12093563000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
58.8731
57.9621
59.8131
41.7312
11328211216817563
68.9106
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
18.3933
12.4471
35.2174
39.3140
1471034162298265
88.9262
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
26.2530
22.2973
31.9149
42.5829
33115105224205
91.5179
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
7.4541
0.0000
0.0000
65807000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
35.8169
30.4348
43.5115
29.1892
49112577460
81.0811
anovak-vgINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
80.4268
75.9398
85.4772
80.3586
202642063525
71.4286
anovak-vgINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
85.2814
84.5161
86.0606
80.3571
131241422316
69.5652
anovak-vgINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
21.6216
0.0000
0.0000
829000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
84.6703
85.1351
84.2105
80.3618
631164129
75.0000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
52.0833
43.8596
64.1026
99.3572
2532251411
78.5714
anovak-vgINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
55.3846
42.8571
78.2609
99.2474
18241855
100.0000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
11.1111
0.0000
0.0000
18000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
60.8696
100.0000
43.7500
99.4686
60796
66.6667
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
61.2783
55.3295
68.6604
44.0399
204016471963896675
75.3348
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
69.3130
73.8369
65.3114
41.5571
12224331510802609
75.9352
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
31.9797
0.0000
0.0000
378804000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
63.7080
51.7647
82.8154
52.5585
4404104539466
70.2128
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
27.0890
20.6844
39.2387
39.7707
2721043268415363
87.4699
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
39.5158
40.0000
39.0432
37.8119
132198253395347
87.8481
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
16.1412
0.0000
0.0000
128665000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
10.9091
6.2500
42.8571
61.9565
12180152016
80.0000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
64.3273
59.5954
69.8756
29.2072
10316991067460370
80.4348
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
72.4560
79.2319
66.7478
27.2137
557146823410336
81.9512
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
40.5822
0.0000
0.0000
237347000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
65.0593
53.4989
82.9932
36.5011
2372062445034
68.0000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
22.4849
18.3099
29.1262
29.9320
26116307361
83.5616
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
32.5234
37.5000
28.7129
27.3381
915297260
83.3333
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
16.4948
0.0000
0.0000
1681000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
8.6957
4.7619
50.0000
75.0000
120111
100.0000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15map_l100_m0_e0*
75.4516
68.9320
83.3333
89.1892
7132701412
85.7143