PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85651-85700 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | homalt | 85.6502 | 77.0161 | 96.4646 | 89.3777 | 191 | 57 | 191 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | * | 66.7485 | 69.5652 | 64.1509 | 98.1232 | 32 | 14 | 34 | 19 | 9 | 47.3684 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | het | 70.3504 | 81.8182 | 61.7021 | 97.9322 | 27 | 6 | 29 | 18 | 8 | 44.4444 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | homalt | 52.6316 | 38.4615 | 83.3333 | 98.9111 | 5 | 8 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | * | 72.2457 | 74.2690 | 70.3297 | 96.0219 | 127 | 44 | 128 | 54 | 24 | 44.4444 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | het | 72.2766 | 81.9820 | 64.6259 | 95.9781 | 91 | 20 | 95 | 52 | 22 | 42.3077 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | homalt | 73.0707 | 59.6491 | 94.2857 | 96.1957 | 34 | 23 | 33 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | * | 72.9497 | 74.4565 | 71.5026 | 96.2008 | 137 | 47 | 138 | 55 | 24 | 43.6364 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | het | 72.6137 | 80.9917 | 65.8065 | 96.1529 | 98 | 23 | 102 | 53 | 22 | 41.5094 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.3844 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | * | 72.7100 | 74.5946 | 70.9184 | 96.2235 | 138 | 47 | 139 | 57 | 24 | 42.1053 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | het | 72.2986 | 81.1475 | 65.1899 | 96.1529 | 99 | 23 | 103 | 55 | 22 | 40.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.4912 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_siren | * | 87.4723 | 88.4103 | 86.5539 | 80.0641 | 3120 | 409 | 3122 | 485 | 188 | 38.7629 | |
| anovak-vg | INDEL | D1_5 | map_siren | het | 86.2774 | 89.9868 | 82.8617 | 80.2332 | 2049 | 228 | 2079 | 430 | 142 | 33.0233 | |
| anovak-vg | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 32.1429 | 0.0000 | 0.0000 | 27 | 57 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_siren | homalt | 92.1020 | 89.3836 | 94.9909 | 79.6667 | 1044 | 124 | 1043 | 55 | 46 | 83.6364 | |
| anovak-vg | INDEL | D1_5 | segdup | * | 91.5860 | 90.4805 | 92.7189 | 94.7590 | 998 | 105 | 1006 | 79 | 52 | 65.8228 | |
| anovak-vg | INDEL | D1_5 | segdup | het | 93.3306 | 94.0751 | 92.5978 | 95.1126 | 651 | 41 | 663 | 53 | 34 | 64.1509 | |
| anovak-vg | INDEL | D1_5 | segdup | hetalt | 0.0000 | 17.3077 | 0.0000 | 0.0000 | 9 | 43 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdup | homalt | 93.5483 | 94.1504 | 92.9539 | 93.9028 | 338 | 21 | 343 | 26 | 18 | 69.2308 | |
| anovak-vg | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9921 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | * | 88.2353 | 78.9474 | 100.0000 | 40.0000 | 15 | 4 | 15 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 22.2222 | 7 | 1 | 7 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 50.0000 | 8 | 1 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | * | * | 67.2100 | 61.4480 | 74.1646 | 48.0426 | 16033 | 10059 | 16202 | 5644 | 4329 | 76.7009 | |
| anovak-vg | INDEL | D6_15 | * | het | 76.4820 | 81.7202 | 71.8750 | 45.3746 | 9473 | 2119 | 11523 | 4509 | 3518 | 78.0217 | |
| anovak-vg | INDEL | D6_15 | * | hetalt | 0.0000 | 24.6269 | 0.0000 | 0.0000 | 2013 | 6161 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | * | homalt | 75.9353 | 71.8780 | 80.4782 | 54.2097 | 4547 | 1779 | 4679 | 1135 | 811 | 71.4537 | |
| anovak-vg | INDEL | D6_15 | HG002complexvar | * | 72.7472 | 67.2954 | 79.1602 | 52.2024 | 3568 | 1734 | 3582 | 943 | 676 | 71.6861 | |
| anovak-vg | INDEL | D6_15 | HG002complexvar | het | 77.7392 | 75.0641 | 80.6119 | 50.1246 | 2342 | 778 | 2582 | 621 | 443 | 71.3366 | |
| anovak-vg | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 25.8638 | 0.0000 | 0.0000 | 262 | 751 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | HG002complexvar | homalt | 78.9062 | 82.4636 | 75.6430 | 56.5846 | 964 | 205 | 1000 | 322 | 233 | 72.3602 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | * | 33.7576 | 27.6935 | 43.2221 | 33.8439 | 2501 | 6530 | 2707 | 3556 | 2531 | 71.1755 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | het | 52.4874 | 55.7243 | 49.6058 | 30.8102 | 477 | 379 | 2580 | 2621 | 1862 | 71.0416 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 24.5859 | 0.0000 | 0.0000 | 2004 | 6147 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | HG002compoundhet | homalt | 20.9157 | 83.3333 | 11.9586 | 45.5385 | 20 | 4 | 127 | 935 | 669 | 71.5508 | |
| anovak-vg | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.9147 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| anovak-vg | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.8978 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| anovak-vg | INDEL | D6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D6_15 | func_cds | * | 79.0123 | 74.4186 | 84.2105 | 49.3333 | 32 | 11 | 32 | 6 | 5 | 83.3333 | |