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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84851-84900 / 86044 show all
anovak-vgINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
16.7947
0.0000
0.0000
3061516000
anovak-vgINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
52.6463
45.0798
63.2653
66.5529
339413372216150
69.4444
anovak-vgINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
65.1163
63.6364
66.6667
99.3328
74633
100.0000
anovak-vgINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
70.1754
62.5000
80.0000
99.4253
53411
100.0000
anovak-vgINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
99.1649
20222
100.0000
anovak-vgINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.5683
79.9506
83.2528
70.9561
515131291852192104997538
71.7973
anovak-vgINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
85.1154
90.5013
80.3346
69.7300
3007931573351882055776
70.3961
anovak-vgINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
30.4432
0.0000
0.0000
28306466000
anovak-vgINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
86.9581
84.9537
89.0595
73.1224
1860432951867422941762
76.8091
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
71.0827
79.4287
64.3238
52.6876
1092728301434179545860
73.6736
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
28.3070
0.0000
0.0000
26306661000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
68.8773
63.7081
74.9595
62.4506
53263034555018541409
75.9978
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
82.0253
80.8399
83.2461
66.0293
61614663612870
54.6875
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
84.0047
86.8966
81.2992
66.0428
378574139549
51.5789
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
24.6377
0.0000
0.0000
1752000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
86.3781
85.6589
87.1094
66.0027
221372233321
63.6364
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
63.1579
60.0000
66.6667
99.3066
64633
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
57.1429
80.0000
99.3990
43411
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
99.1416
20222
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
86.4073
86.7056
86.1111
74.4351
13372051364220118
53.6364
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
87.1392
90.6725
83.8710
73.1533
8368688417086
50.5882
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
35.1351
0.0000
0.0000
2648000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
88.7453
86.9963
90.5660
76.6520
475714805032
64.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
87.9887
87.7705
88.2080
78.0159
93313095012770
55.1181
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
88.3047
90.1065
86.5734
76.6949
592656199650
52.0833
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
40.5405
0.0000
0.0000
1522000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
89.8651
88.3469
91.4365
80.2294
326433313120
64.5161
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
35.7126
30.6097
42.8571
50.7598
73816738611148864
75.2613
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
48.6351
57.2200
42.2902
47.0270
4243177461018780
76.6208
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
16.8087
0.0000
0.0000
2171074000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
33.1255
25.5937
46.9388
67.3333
9728211513084
64.6154
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
10000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
10000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.1762
50.3884
58.5798
35.8416
10378102181115378866105
77.4157
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
64.5845
75.5146
56.4183
33.5145
55761808842165055048
77.6018
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
27.6590
0.0000
0.0000
22395856000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
57.1106
50.0879
66.4235
43.0727
25632554273213811057
76.5387
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.4171
52.9438
60.3781
34.2544
966785921031567695257
77.6629
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
66.4676
77.4068
58.2374
31.9666
51701509769255164283
77.6468
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
29.6470
0.0000
0.0000
20244803000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
58.8295
52.0303
67.6729
41.0135
2473228026231253974
77.7334
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
56.6887
53.0607
60.8492
45.3700
11806104441261181146224
76.7069
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
66.4593
77.1439
58.3743
42.1879
64771919937266835135
76.8367
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
27.7254
0.0000
0.0000
22665907000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
60.6700
53.9166
69.3576
54.0626
30632618323914311089
76.1006