PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84801-84850 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | * | 57.1429 | 50.0000 | 66.6667 | 97.2477 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.0526 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 60.0000 | 75.0000 | 96.5217 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.2500 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 60.0000 | 75.0000 | 96.6387 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 66.6667 | 66.6667 | 96.3415 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_siren | * | 55.8559 | 43.3566 | 78.4810 | 82.5221 | 62 | 81 | 62 | 17 | 14 | 82.3529 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | het | 65.2174 | 57.6923 | 75.0000 | 77.5439 | 45 | 33 | 48 | 16 | 13 | 81.2500 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 6.4516 | 0.0000 | 0.0000 | 2 | 29 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_siren | homalt | 59.9144 | 44.1176 | 93.3333 | 91.0180 | 15 | 19 | 14 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | * | 76.0605 | 68.9655 | 84.7826 | 91.5129 | 40 | 18 | 39 | 7 | 4 | 57.1429 | |
| anovak-vg | INDEL | D16_PLUS | segdup | het | 82.8571 | 78.3784 | 87.8788 | 91.3613 | 29 | 8 | 29 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | segdup | homalt | 83.6502 | 91.6667 | 76.9231 | 91.8750 | 11 | 1 | 10 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | * | 33.3333 | 25.0000 | 50.0000 | 50.0000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | het | 40.0000 | 25.0000 | 100.0000 | 0.0000 | 1 | 3 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | D1_5 | * | * | 90.2130 | 89.2296 | 91.2183 | 56.6455 | 130940 | 15805 | 132532 | 12759 | 9010 | 70.6168 | |
| anovak-vg | INDEL | D1_5 | * | het | 92.1131 | 94.4127 | 89.9228 | 55.4448 | 82681 | 4893 | 86771 | 9724 | 6623 | 68.1098 | |
| anovak-vg | INDEL | D1_5 | * | hetalt | 0.0000 | 29.0971 | 0.0000 | 0.0000 | 2981 | 7264 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | * | homalt | 93.1579 | 92.5438 | 93.7802 | 58.8390 | 45278 | 3648 | 45761 | 3035 | 2387 | 78.6491 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | * | 91.1523 | 90.0107 | 92.3232 | 54.8532 | 29447 | 3268 | 29789 | 2477 | 1674 | 67.5818 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | het | 92.0015 | 90.8693 | 93.1622 | 52.9821 | 18869 | 1896 | 19565 | 1436 | 834 | 58.0780 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 35.5769 | 0.0000 | 0.0000 | 481 | 871 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | HG002complexvar | homalt | 92.9611 | 95.2727 | 90.7590 | 57.9711 | 10097 | 501 | 10224 | 1041 | 840 | 80.6916 | |
| anovak-vg | INDEL | D1_5 | HG002compoundhet | * | 38.6407 | 34.4667 | 43.9649 | 65.5035 | 4217 | 8018 | 4859 | 6193 | 4434 | 71.5970 | |
| anovak-vg | INDEL | D1_5 | HG002compoundhet | het | 54.0229 | 57.5810 | 50.8790 | 62.2806 | 995 | 733 | 4428 | 4275 | 2764 | 64.6550 | |
| anovak-vg | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 29.0525 | 0.0000 | 0.0000 | 2968 | 7248 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | HG002compoundhet | homalt | 30.3224 | 87.2852 | 18.3482 | 73.7981 | 254 | 37 | 431 | 1918 | 1670 | 87.0699 | |
| anovak-vg | INDEL | D1_5 | decoy | * | 77.4194 | 75.0000 | 80.0000 | 99.9469 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9735 | 2 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | decoy | homalt | 80.0000 | 100.0000 | 66.6667 | 99.8399 | 1 | 0 | 2 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | func_cds | * | 92.1630 | 92.4528 | 91.8750 | 37.7432 | 147 | 12 | 147 | 13 | 9 | 69.2308 | |
| anovak-vg | INDEL | D1_5 | func_cds | het | 90.3955 | 94.1176 | 86.9565 | 42.5000 | 80 | 5 | 80 | 12 | 8 | 66.6667 | |
| anovak-vg | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | func_cds | homalt | 94.3662 | 90.5405 | 98.5294 | 29.8969 | 67 | 7 | 67 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 44.1057 | 39.2068 | 50.4037 | 54.9961 | 1562 | 2422 | 1748 | 1720 | 1273 | 74.0116 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 55.0866 | 65.0355 | 47.7778 | 51.5804 | 917 | 493 | 1376 | 1504 | 1123 | 74.6676 | |