PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83951-84000 / 86044 show all
anovak-vgINDELI16_PLUSmap_sirenhomalt
55.0459
66.6667
46.8750
67.3469
147151716
94.1176
anovak-vgINDELI16_PLUSsegdup*
48.3031
38.2979
65.3846
88.6463
18291795
55.5556
anovak-vgINDELI16_PLUSsegduphet
34.4828
20.8333
100.0000
91.2281
519500
anovak-vgINDELI16_PLUSsegduphetalt
0.0000
25.0000
0.0000
0.0000
13000
anovak-vgINDELI16_PLUSsegduphomalt
60.0000
63.1579
57.1429
87.7907
1271295
55.5556
anovak-vgINDELI16_PLUSsegdupwithalt*
0.0000
100.0000
00000
anovak-vgINDELI16_PLUSsegdupwithalthet
0.0000
100.0000
00000
anovak-vgINDELI16_PLUSsegdupwithalthetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELI16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
anovak-vgINDELI16_PLUStech_badpromoters*
33.3333
25.0000
50.0000
0.0000
13111
100.0000
anovak-vgINDELI16_PLUStech_badpromotershet
0.0000
0.0000
0.0000
02011
100.0000
anovak-vgINDELI16_PLUStech_badpromotershetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELI16_PLUStech_badpromotershomalt
66.6667
50.0000
100.0000
0.0000
11100
anovak-vgINDELI1_5**
54.8287
54.8578
54.7996
53.4671
8265168013848446998259671
85.2662
anovak-vgINDELI1_5*het
38.2803
26.6836
67.7044
67.2836
210915795025553121894021
32.9888
anovak-vgINDELI1_5*hetalt
0.0000
31.2282
0.0000
0.0000
34967699000
anovak-vgINDELI1_5*homalt
66.3251
96.0879
50.6397
46.1343
580642364592915779355650
96.2919
anovak-vgINDELI1_5HG002complexvar*
58.0984
57.1891
59.0370
52.0780
1908014283193601343312541
93.3596
anovak-vgINDELI1_5HG002complexvarhet
44.4856
30.2381
84.1220
66.7223
55001268962041171683
58.3262
anovak-vgINDELI1_5HG002complexvarhetalt
0.0000
36.2109
0.0000
0.0000
6251101000
anovak-vgINDELI1_5HG002complexvarhomalt
67.3378
96.3340
51.7586
45.0635
12955493131561226211858
96.7053
anovak-vgINDELI1_5HG002compoundhet*
40.3635
33.5626
50.6211
62.9728
41478209562454864446
81.0427
anovak-vgINDELI1_5HG002compoundhethet
51.6510
42.9412
64.7929
62.2549
365485455324741995
80.6386
anovak-vgINDELI1_5HG002compoundhethetalt
0.0000
31.2338
0.0000
0.0000
34917686000
anovak-vgINDELI1_5HG002compoundhethomalt
40.4620
88.4498
26.2307
64.1465
29138107130122451
81.3745
anovak-vgINDELI1_5decoy*
0.0000
100.0000
00000
anovak-vgINDELI1_5decoyhet
0.0000
100.0000
00000
anovak-vgINDELI1_5decoyhetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELI1_5decoyhomalt
0.0000
100.0000
00000
anovak-vgINDELI1_5func_cds*
77.5623
77.7778
77.3481
34.6570
140401404129
70.7317
anovak-vgINDELI1_5func_cdshet
53.0612
44.0678
66.6667
45.0704
263326133
23.0769
anovak-vgINDELI1_5func_cdshetalt
0.0000
0.0000
0.0000
02000
anovak-vgINDELI1_5func_cdshomalt
87.3563
95.7983
80.2817
31.0680
11451142826
92.8571
anovak-vgINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
39.1152
33.2790
47.4335
60.0049
6131229767850647
76.1176
anovak-vgINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
43.1111
37.0091
51.6227
61.5894
245417509477324
67.9245
anovak-vgINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
16.9454
0.0000
0.0000
152745000
anovak-vgINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
53.2492
76.3251
40.8875
57.2493
21667258373323
86.5952
anovak-vgINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
01000
anovak-vgINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
54.5816
47.5637
64.0290
69.1270
740981681439580876755
83.5291
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
47.9368
36.5290
69.7055
72.0207
22293873913739712851
71.7955
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
32.9741
0.0000
0.0000
19583980000
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
69.4306
91.0941
56.0913
63.9073
3222315525841163904
94.8494
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
53.3229
48.2739
59.5513
59.8591
776183161072472845656
77.6496
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
50.2462
41.8069
62.9545
59.3735
26843736661438922524
64.8510
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
31.0550
0.0000
0.0000
18314065000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
67.0250
86.3068
54.7854
60.5199
3246515411033923132
92.3349
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
51.6345
52.3810
50.9091
64.2857
330300336324243
75.0000