PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83751-83800 / 86044 show all
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.4133
98.4093
98.4173
55.0598
13612213682217
77.2727
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
67.7132
76.4249
60.7843
87.7538
2959134122080
36.3636
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
63.0411
72.4638
55.7870
87.7238
2007624119159
30.8901
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
81.7029
86.3636
77.5194
87.8531
95151002921
72.4138
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
78.5739
85.5355
72.6602
82.1649
232439327561037513
49.4696
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
74.9889
82.2562
68.9015
82.7699
14513131819821334
40.6821
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
20000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
86.1189
91.5878
81.2663
80.6056
87180937216179
82.8704
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
80.3087
86.8666
74.6716
81.1723
20573112444829438
52.8347
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
77.1176
83.8177
71.4094
81.9321
12692451596639277
43.3490
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
20000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
86.6541
92.2535
81.6956
79.2980
78666848190161
84.7368
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.2721
93.5191
89.1304
80.4771
10101700105781290640
49.6124
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.4551
92.2272
86.8448
82.4170
634853567601024420
41.0156
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
66.6667
0.0000
0.0000
21000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.6346
95.8110
93.4868
75.2785
37511643818266220
82.7068
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
90.4686
92.4642
88.5573
75.8297
4225834444299955561706
30.7055
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.8643
91.4147
84.5794
78.5110
2624724652690349051242
25.3211
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
33.3333
0.0000
0.0000
510000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.1935
94.2916
96.1127
68.3224
1600696916096651464
71.2750
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50*
92.1861
94.9340
89.5928
65.6359
920149198571145571
49.8690
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50het
90.7742
93.8101
87.9287
67.8048
58503866359873348
39.8625
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
10000
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
94.8271
96.9609
92.7851
60.5360
33501053498272223
81.9853
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_51to200*
66.5816
64.2857
69.0476
95.7704
271529138
61.5385
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_51to200het
63.1476
62.9630
63.3333
96.0159
171019117
63.6364
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
74.0741
66.6667
83.3333
95.0000
1051021
50.0000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
97.9194
98.3001
97.5417
56.1712
1688529217260435173
39.7701
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
97.5583
98.0061
97.1145
57.2508
1086322111039328130
39.6341
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.6034
98.8995
98.3091
54.0884
602167622110743
40.1869
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50*
96.4963
97.0192
95.9791
41.7450
1764154217783745376
50.4698
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50het
95.7432
96.5626
94.9376
45.0963
1104039311177596251
42.1141
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
97.8222
97.8503
97.7942
34.8099
66001456606149125
83.8926
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_51to200*
62.2688
72.0280
54.8387
90.2559
103401199835
35.7143
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_51to200het
58.1498
70.5882
49.4382
90.1657
7230889030
33.3333
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
77.5000
75.6098
79.4872
90.6475
31103185
62.5000