PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83451-83500 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | tv | map_l125_m2_e0 | het | 86.2155 | 76.0103 | 99.5858 | 81.0010 | 7937 | 2505 | 7935 | 33 | 8 | 24.2424 | |
| astatham-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l125_m2_e0 | homalt | 99.4410 | 99.0361 | 99.8492 | 66.8223 | 5959 | 58 | 5959 | 9 | 6 | 66.6667 | |
| astatham-gatk | SNP | tv | map_l125_m2_e1 | * | 91.4416 | 84.4450 | 99.7023 | 76.7879 | 14066 | 2591 | 14064 | 42 | 14 | 33.3333 | |
| astatham-gatk | SNP | tv | map_l125_m2_e1 | het | 86.2148 | 76.0068 | 99.5902 | 81.0461 | 8021 | 2532 | 8019 | 33 | 8 | 24.2424 | |
| astatham-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.4462 | 99.0451 | 99.8506 | 66.8391 | 6016 | 58 | 6016 | 9 | 6 | 66.6667 | |
| astatham-gatk | SNP | tv | map_l150_m0_e0 | * | 93.7784 | 88.8356 | 99.3035 | 83.1642 | 3708 | 466 | 3707 | 26 | 6 | 23.0769 | |
| astatham-gatk | SNP | tv | map_l150_m0_e0 | het | 91.2506 | 84.5586 | 99.0928 | 85.6322 | 2404 | 439 | 2403 | 22 | 3 | 13.6364 | |
| astatham-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.2857 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m0_e0 | homalt | 98.8226 | 97.9669 | 99.6935 | 75.2231 | 1301 | 27 | 1301 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | tv | map_l150_m1_e0 | * | 91.6254 | 84.8240 | 99.6125 | 79.0350 | 9256 | 1656 | 9254 | 36 | 13 | 36.1111 | |
| astatham-gatk | SNP | tv | map_l150_m1_e0 | het | 86.7142 | 76.8644 | 99.4596 | 83.0624 | 5339 | 1607 | 5337 | 29 | 8 | 27.5862 | |
| astatham-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 75.9494 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m1_e0 | homalt | 99.2995 | 98.7836 | 99.8207 | 68.8894 | 3898 | 48 | 3898 | 7 | 5 | 71.4286 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | * | 91.6536 | 84.8613 | 99.6277 | 80.3003 | 9636 | 1719 | 9634 | 36 | 13 | 36.1111 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | het | 86.7915 | 76.9719 | 99.4830 | 83.9440 | 5582 | 1670 | 5580 | 29 | 8 | 27.5862 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m2_e0 | homalt | 99.3231 | 98.8244 | 99.8268 | 71.2518 | 4035 | 48 | 4035 | 7 | 5 | 71.4286 | |
| astatham-gatk | SNP | tv | map_l150_m2_e1 | * | 91.6416 | 84.8374 | 99.6324 | 80.3148 | 9758 | 1744 | 9756 | 36 | 13 | 36.1111 | |
| astatham-gatk | SNP | tv | map_l150_m2_e1 | het | 86.7689 | 76.9325 | 99.4894 | 83.9661 | 5653 | 1695 | 5651 | 29 | 8 | 27.5862 | |
| astatham-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m2_e1 | homalt | 99.3315 | 98.8389 | 99.8290 | 71.2267 | 4086 | 48 | 4086 | 7 | 5 | 71.4286 | |
| astatham-gatk | SNP | tv | map_l250_m0_e0 | * | 93.9497 | 90.3268 | 97.8754 | 93.7472 | 691 | 74 | 691 | 15 | 5 | 33.3333 | |
| astatham-gatk | SNP | tv | map_l250_m0_e0 | het | 92.7323 | 88.1119 | 97.8641 | 94.1324 | 504 | 68 | 504 | 11 | 2 | 18.1818 | |
| astatham-gatk | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | map_l250_m0_e0 | homalt | 97.3958 | 96.8912 | 97.9058 | 92.3692 | 187 | 6 | 187 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | tv | map_l250_m1_e0 | * | 92.5829 | 87.0042 | 98.9261 | 90.0355 | 2303 | 344 | 2303 | 25 | 7 | 28.0000 | |
| astatham-gatk | SNP | tv | map_l250_m1_e0 | het | 89.4463 | 81.8131 | 98.6505 | 91.5618 | 1462 | 325 | 1462 | 20 | 3 | 15.0000 | |
| astatham-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.7436 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l250_m1_e0 | homalt | 98.5866 | 97.7804 | 99.4062 | 85.3845 | 837 | 19 | 837 | 5 | 4 | 80.0000 | |
| astatham-gatk | SNP | tv | map_l250_m2_e0 | * | 92.3931 | 86.6065 | 99.0083 | 90.6397 | 2496 | 386 | 2496 | 25 | 7 | 28.0000 | |
| astatham-gatk | SNP | tv | map_l250_m2_e0 | het | 89.1403 | 81.2371 | 98.7469 | 92.0672 | 1576 | 364 | 1576 | 20 | 3 | 15.0000 | |
| astatham-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l250_m2_e0 | homalt | 98.5460 | 97.6521 | 99.4565 | 86.4046 | 915 | 22 | 915 | 5 | 4 | 80.0000 | |
| astatham-gatk | SNP | tv | map_l250_m2_e1 | * | 92.4090 | 86.6255 | 99.0200 | 90.7000 | 2526 | 390 | 2526 | 25 | 7 | 28.0000 | |
| astatham-gatk | SNP | tv | map_l250_m2_e1 | het | 89.1681 | 81.2723 | 98.7631 | 92.1160 | 1597 | 368 | 1597 | 20 | 3 | 15.0000 | |
| astatham-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l250_m2_e1 | homalt | 98.5600 | 97.6744 | 99.4618 | 86.4833 | 924 | 22 | 924 | 5 | 4 | 80.0000 | |
| astatham-gatk | SNP | tv | map_siren | * | 92.9445 | 86.9192 | 99.8674 | 62.0464 | 39922 | 6008 | 39914 | 53 | 21 | 39.6226 | |
| astatham-gatk | SNP | tv | map_siren | het | 88.3820 | 79.2932 | 99.8239 | 66.9200 | 22685 | 5924 | 22680 | 40 | 11 | 27.5000 | |
| astatham-gatk | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 69.1406 | 79 | 2 | 79 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_siren | homalt | 99.7239 | 99.5244 | 99.9243 | 52.7924 | 17158 | 82 | 17155 | 13 | 10 | 76.9231 | |
| astatham-gatk | SNP | tv | segdup | * | 99.1149 | 98.4412 | 99.7979 | 91.5044 | 8399 | 133 | 8395 | 17 | 6 | 35.2941 | |
| astatham-gatk | SNP | tv | segdup | het | 98.6416 | 97.5222 | 99.7869 | 92.4167 | 5156 | 131 | 5152 | 11 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6825 | 7 | 0 | 7 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||