PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83251-83300 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l125_m2_e0 | homalt | 99.4872 | 99.0755 | 99.9023 | 65.7910 | 11253 | 105 | 11253 | 11 | 10 | 90.9091 | |
| astatham-gatk | SNP | ti | map_l125_m2_e1 | * | 91.2494 | 84.0525 | 99.7941 | 76.0425 | 25694 | 4875 | 25690 | 53 | 29 | 54.7170 | |
| astatham-gatk | SNP | ti | map_l125_m2_e1 | het | 85.6126 | 75.0092 | 99.7074 | 80.6356 | 14317 | 4770 | 14313 | 42 | 19 | 45.2381 | |
| astatham-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l125_m2_e1 | homalt | 99.4917 | 99.0836 | 99.9032 | 65.8143 | 11353 | 105 | 11353 | 11 | 10 | 90.9091 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | * | 93.2170 | 87.6733 | 99.5090 | 82.5398 | 6892 | 969 | 6890 | 34 | 15 | 44.1176 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | het | 89.8677 | 82.0483 | 99.3346 | 85.7819 | 4182 | 915 | 4180 | 28 | 9 | 32.1429 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m0_e0 | homalt | 98.9039 | 98.0442 | 99.7788 | 72.9781 | 2707 | 54 | 2707 | 6 | 6 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l150_m1_e0 | * | 91.3534 | 84.2837 | 99.7178 | 78.6410 | 16614 | 3098 | 16610 | 47 | 26 | 55.3191 | |
| astatham-gatk | SNP | ti | map_l150_m1_e0 | het | 85.9873 | 75.6508 | 99.5954 | 82.9552 | 9358 | 3012 | 9354 | 38 | 18 | 47.3684 | |
| astatham-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.3483 | 98.8263 | 99.8759 | 68.2477 | 7241 | 86 | 7241 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | * | 91.3750 | 84.3165 | 99.7232 | 79.9461 | 17295 | 3217 | 17291 | 48 | 27 | 56.2500 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | het | 86.0268 | 75.7084 | 99.6015 | 83.8910 | 9752 | 3129 | 9748 | 39 | 19 | 48.7179 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | tv | segdup | homalt | 99.8765 | 99.9382 | 99.8149 | 89.4470 | 3236 | 2 | 3236 | 6 | 6 | 100.0000 | |
| astatham-gatk | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 53.6424 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | tech_badpromoters | het | 96.8750 | 93.9394 | 100.0000 | 55.7143 | 31 | 2 | 31 | 0 | 0 | ||
| astatham-gatk | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.3599 | 98.8445 | 99.8806 | 70.6148 | 7528 | 88 | 7528 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | ti | map_l150_m2_e1 | * | 91.3679 | 84.3025 | 99.7259 | 80.0126 | 17470 | 3253 | 17466 | 48 | 27 | 56.2500 | |
| astatham-gatk | SNP | ti | map_l150_m2_e1 | het | 86.0111 | 75.6819 | 99.6055 | 83.9600 | 9850 | 3165 | 9846 | 39 | 19 | 48.7179 | |
| astatham-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.3663 | 98.8561 | 99.8818 | 70.6476 | 7605 | 88 | 7605 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | ti | map_l250_m0_e0 | * | 93.8385 | 89.4891 | 98.6323 | 93.8175 | 1226 | 144 | 1226 | 17 | 3 | 17.6471 | |
| astatham-gatk | SNP | ti | map_l250_m0_e0 | het | 91.6667 | 85.9743 | 98.1663 | 94.6856 | 803 | 131 | 803 | 15 | 1 | 6.6667 | |
| astatham-gatk | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | ti | map_l250_m0_e0 | homalt | 98.2578 | 97.0183 | 99.5294 | 90.9651 | 423 | 13 | 423 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l250_m1_e0 | * | 92.9011 | 87.3116 | 99.2552 | 90.3133 | 3998 | 581 | 3998 | 30 | 12 | 40.0000 | |
| astatham-gatk | SNP | ti | map_l250_m1_e0 | het | 89.5242 | 81.7722 | 98.8998 | 92.0567 | 2427 | 541 | 2427 | 27 | 9 | 33.3333 | |
| astatham-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.0000 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l250_m1_e0 | homalt | 98.6465 | 97.5109 | 99.8089 | 85.2776 | 1567 | 40 | 1567 | 3 | 3 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l250_m2_e0 | * | 92.8085 | 87.1006 | 99.3169 | 90.7841 | 4362 | 646 | 4362 | 30 | 12 | 40.0000 | |
| astatham-gatk | SNP | ti | map_l250_m2_e0 | het | 89.3237 | 81.3768 | 98.9907 | 92.3822 | 2648 | 606 | 2648 | 27 | 9 | 33.3333 | |
| astatham-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.7586 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l250_m2_e0 | homalt | 98.7576 | 97.7130 | 99.8248 | 86.3182 | 1709 | 40 | 1709 | 3 | 3 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l250_m2_e1 | * | 92.8549 | 87.1749 | 99.3266 | 90.8364 | 4425 | 651 | 4425 | 30 | 12 | 40.0000 | |
| astatham-gatk | SNP | ti | map_l250_m2_e1 | het | 89.3914 | 81.4792 | 99.0055 | 92.4310 | 2688 | 611 | 2688 | 27 | 9 | 33.3333 | |
| astatham-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.7586 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l250_m2_e1 | homalt | 98.7739 | 97.7427 | 99.8271 | 86.3568 | 1732 | 40 | 1732 | 3 | 3 | 100.0000 | |
| astatham-gatk | SNP | ti | map_siren | * | 94.0656 | 88.8705 | 99.9059 | 56.9785 | 89186 | 11169 | 89171 | 84 | 46 | 54.7619 | |
| astatham-gatk | SNP | ti | map_siren | het | 90.2825 | 82.3747 | 99.8698 | 61.4644 | 51387 | 10995 | 51378 | 67 | 30 | 44.7761 | |
| astatham-gatk | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 68.0000 | 56 | 1 | 56 | 0 | 0 | ||