PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
83151-83200 / 86044 show all
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7781
99.6454
99.9111
42.4847
11244112411
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7126
99.4764
99.9499
47.9937
399021399020
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6057
99.2925
99.9209
50.5187
252618252620
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8976
99.7954
100.0000
42.9630
14633146300
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8152
99.6720
99.9589
50.5792
24318243110
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7464
99.5570
99.9365
52.5475
15737157310
0.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9417
99.8834
100.0000
46.5044
857185700
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
96.9977
95.0226
99.0566
91.2215
2101121022
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.6443
94.7368
98.6301
91.5704
144814422
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.7778
95.6522
100.0000
90.3084
6636600
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.2387
96.8364
99.6823
87.5285
125541125544
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.7884
96.1222
99.5134
88.6370
8183381844
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
10100
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.0909
98.1982
100.0000
84.6695
436843600
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.3923
97.0109
99.8136
86.7219
107133107122
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.8784
96.1111
99.7118
87.9785
6922869222
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
10100
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3430
98.6945
100.0000
83.5150
378537800
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.2670
98.6631
99.8783
77.1278
656889656885
62.5000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.0127
98.2067
99.8321
79.0112
416276416274
57.1429
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.0000
20200
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7097
99.4621
99.9584
72.8647
240413240411
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9634
98.0991
99.8431
67.2451
30551592305514817
35.4167
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5342
97.3339
99.7644
69.1366
19057522190574514
31.1111
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
83.0986
1201200
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6831
99.3940
99.9739
63.4875
11482701148233
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.2293
98.4908
99.9790
69.4708
476473476411
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
98.9572
97.9670
99.9676
71.7050
308464308411
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.7368
10100
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7327
99.4668
100.0000
64.1699
16799167900
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200*
96.7742
93.7500
100.0000
97.8510
1511500
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200het
94.7368
90.0000
100.0000
98.2857
91900
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.5116
60600
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.6158
99.2821
99.9518
44.5938
622345622332
66.6667
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.4684
98.9668
99.9751
45.9140
402342402310
0.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8864
99.8637
99.9091
41.9065
21983219822
100.0000