PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
82851-82900 / 86044 show all
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7622
99.6881
99.8364
49.1224
6712216714116
54.5455
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.6989
99.5626
99.8355
53.1956
364216364161
16.6667
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6744
99.4583
99.8915
29.8859
918592111
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
100.0000
99.8145
47.5553
21520215244
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200*
96.1232
95.4955
96.7593
64.9351
2121020974
57.1429
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200het
90.5425
92.0000
89.1304
86.3905
4644152
40.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
97.5410
95.2000
100.0000
29.2398
119612100
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
97.9167
100.0000
95.9184
54.2056
4704722
100.0000
astatham-gatkINDEL*map_l100_m0_e0*
96.7251
96.2892
97.1649
87.6728
1505581508449
20.4545
astatham-gatkINDEL*map_l100_m0_e0het
95.7071
94.9070
96.5209
88.5382
96952971354
11.4286
astatham-gatkINDEL*map_l100_m0_e0hetalt
96.8750
93.9394
100.0000
91.2088
3123200
astatham-gatkINDEL*map_l100_m0_e0homalt
98.7292
99.2141
98.2490
85.0971
505450595
55.5556
astatham-gatkINDEL*map_l100_m1_e0*
96.5907
95.1478
98.0780
85.9214
341217434196717
25.3731
astatham-gatkINDEL*map_l100_m1_e0het
95.1305
93.0201
97.3389
86.8492
207915620855711
19.2982
astatham-gatkINDEL*map_l100_m1_e0hetalt
95.3586
91.1290
100.0000
86.6040
1131111400
astatham-gatkINDEL*map_l100_m1_e0homalt
99.3081
99.4295
99.1870
83.8625
122071220106
60.0000
astatham-gatkINDEL*map_l100_m2_e0*
96.5801
95.1530
98.0507
86.7138
351417935217018
25.7143
astatham-gatkINDEL*map_l100_m2_e0het
95.1270
93.0212
97.3303
87.5556
214616121515912
20.3390
astatham-gatkINDEL*map_l100_m2_e0hetalt
95.3975
91.2000
100.0000
87.4865
1141111600
astatham-gatkINDEL*map_l100_m2_e0homalt
99.2874
99.4449
99.1304
84.8358
125471254116
54.5455
astatham-gatkINDEL*map_l100_m2_e1*
96.5544
95.0745
98.0811
86.7793
357118535787018
25.7143
astatham-gatkINDEL*map_l100_m2_e1het
95.0891
92.9151
97.3672
87.6413
217716621825912
20.3390
astatham-gatkINDEL*map_l100_m2_e1hetalt
95.2381
90.9091
100.0000
87.2518
1201212200
astatham-gatkINDEL*map_l100_m2_e1homalt
99.2985
99.4536
99.1440
84.8877
127471274116
54.5455
astatham-gatkINDEL*map_l125_m0_e0*
96.6572
96.5986
96.7157
90.5095
85230854296
20.6897
astatham-gatkINDEL*map_l125_m0_e0het
95.6440
95.2300
96.0616
91.1381
55928561232
8.6957
astatham-gatkINDEL*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
95.4167
1101100
astatham-gatkINDEL*map_l125_m0_e0homalt
98.6014
99.2958
97.9167
88.3589
282228264
66.6667
astatham-gatkINDEL*map_l125_m1_e0*
96.6598
95.3963
97.9572
88.3361
2010972014429
21.4286
astatham-gatkINDEL*map_l125_m1_e0het
95.1476
93.1835
97.1963
89.1710
1244911248365
13.8889
astatham-gatkINDEL*map_l125_m1_e0hetalt
97.4359
95.0000
100.0000
92.4901
3823800
astatham-gatkINDEL*map_l125_m1_e0homalt
99.3179
99.4536
99.1826
86.0562
728472864
66.6667
astatham-gatkINDEL*map_l125_m2_e0*
96.5138
95.1275
97.9410
89.1008
20891072093449
20.4545
astatham-gatkINDEL*map_l125_m2_e0het
94.9267
92.7390
97.2201
89.8845
12901011294375
13.5135
astatham-gatkINDEL*map_l125_m2_e0hetalt
97.5610
95.2381
100.0000
93.1507
4024000
astatham-gatkINDEL*map_l125_m2_e0homalt
99.2806
99.4758
99.0862
86.9395
759475974
57.1429
astatham-gatkINDEL*map_l125_m2_e1*
96.4891
95.0562
97.9658
89.1866
21151102119449
20.4545
astatham-gatkINDEL*map_l125_m2_e1het
94.9130
92.6847
97.2511
89.9694
13051031309375
13.5135
astatham-gatkINDEL*map_l125_m2_e1hetalt
96.3855
93.0233
100.0000
93.2660
4034000
astatham-gatkINDEL*map_l125_m2_e1homalt
99.2908
99.4832
99.0991
87.0284
770477074
57.1429
astatham-gatkINDEL*map_l150_m0_e0*
96.2251
96.4981
95.9538
92.9541
49618498214
19.0476
astatham-gatkINDEL*map_l150_m0_e0het
95.0292
95.0147
95.0437
93.4915
32417326171
5.8824
astatham-gatkINDEL*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
95.0820
90900
astatham-gatkINDEL*map_l150_m0_e0homalt
98.4894
99.3902
97.6048
91.2703
163116343
75.0000
astatham-gatkINDEL*map_l150_m1_e0*
96.6569
96.0389
97.2830
90.5512
1285531289367
19.4444
astatham-gatkINDEL*map_l150_m1_e0het
95.3423
94.3860
96.3183
91.2356
80748811314
12.9032
astatham-gatkINDEL*map_l150_m1_e0hetalt
97.5610
95.2381
100.0000
94.7507
2012000
astatham-gatkINDEL*map_l150_m1_e0homalt
99.0270
99.1342
98.9201
88.5254
458445853
60.0000