PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
82801-82850 / 86044 show all
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.0371
93.4243
94.6580
64.2218
56834005564314298
94.9045
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
94.4480
96.6024
92.3875
77.6266
2104741869154140
90.9091
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.6552
88.4686
99.4878
37.7483
240931425251313
100.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.6375
98.9848
88.8383
60.2115
1170121170147145
98.6395
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7612
30300
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.9592
20200
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.2963
10100
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6838
97.4223
97.9467
56.1751
3692597736731770739
95.9740
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.1423
98.9601
97.3379
67.2353
1446515214077385358
92.9870
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8059
94.1587
99.6062
31.3760
12960804131545251
98.0769
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1709
99.7794
96.6134
55.6813
9500219500333330
99.0991
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.3493
98.1589
98.5404
55.2323
3140358931326464446
96.1207
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.7180
99.3371
98.1066
65.6768
124388312280237222
93.6709
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.5419
95.5335
99.6365
30.2678
10609496106903938
97.4359
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8291
99.8805
97.7996
55.4001
8356108356188186
98.9362
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8510
97.6024
98.1008
61.8066
42296103942098815759
93.1288
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.2925
98.9506
97.6432
71.0801
1763218717235416367
88.2212
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.7892
94.1206
99.6136
34.1069
13207825134065251
98.0769
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3940
99.7649
97.0603
61.7981
114572711457347341
98.2709
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2824
98.0398
98.5261
67.2886
64070128163840955849
88.9005
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6446
98.9272
98.3637
73.5579
3015332729696494401
81.1741
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0426
94.5944
99.6209
40.6185
15802903160296160
98.3607
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.5463
98.3740
98.7193
52.5147
3599759535921466435
93.3476
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.9118
99.3147
98.5122
62.5969
1565210815494234208
88.8889
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
97.4632
95.4749
99.5360
33.1882
10001474100834746
97.8723
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0520
99.8745
98.2429
45.7715
103441310344185181
97.8378
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.8405
84.9119
86.7896
57.5804
17843171695258252
97.6744
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200het
77.5406
92.6531
66.6667
80.5140
45436278139134
96.4029
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.4680
77.9553
99.6251
31.2943
976276106344
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.5072
98.6072
75.4797
48.5181
3545354115114
99.1304
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8087
99.7134
99.9043
58.1701
2817981281812715
55.5556
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7775
99.6287
99.9267
58.5881
163686116366121
8.3333
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
98.2046
97.0093
99.4297
73.5811
5191652333
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9292
99.9646
99.8938
56.3468
112924112921211
91.6667
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
94.7563
95.1613
94.3548
99.9176
118611770
0.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
92.5252
93.1034
91.9540
99.8905
8168070
0.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8842
1601600
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9633
2102100
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.5288
99.4462
99.6115
59.5139
19752110197457749
63.6364
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.5583
99.5229
99.5937
62.9090
1105553110304518
40.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.8721
97.9866
99.7738
42.6347
262854264666
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7617
99.9506
99.5734
57.9016
6069360692625
96.1538
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
97.6175
97.2128
98.0256
69.1545
25817425325139
76.4706
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
96.9960
97.6240
96.3760
83.1102
945238513222
68.7500
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5860
95.8996
99.3328
33.9394
114649119188
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.6908
99.5935
97.8044
62.3591
4902490119
81.8182
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000