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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
82351-82400 / 86044 show all
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3971
97.0646
97.7319
53.7356
1435143414349333323
96.9970
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.5878
99.1228
96.0996
69.2547
4407394361177169
95.4802
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9771
94.5358
99.5479
27.9803
678239268263130
96.7742
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0161
99.9052
96.1971
55.9029
316233162125124
99.2000
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5920
97.2554
97.9309
57.6692
1718648517181363345
95.0413
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8791
98.9737
96.8085
71.3456
5786605733189174
92.0635
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0717
94.7636
99.4951
30.0679
763742276853938
97.4359
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1994
99.9203
96.5367
59.9507
376333763135133
98.5185
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.8931
97.7585
98.0280
45.2710
92462129246186181
97.3118
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
97.8994
99.2682
96.5678
63.0857
27132027019692
95.8333
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.6772
96.0184
99.3942
25.6555
458219045942827
96.4286
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3863
99.8976
96.9200
41.4826
1951219516262
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.3437
83.1499
87.6565
44.9532
982199980138137
99.2754
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
72.3612
91.8919
59.6774
74.1667
136121117574
98.6667
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.0242
78.7844
99.7191
26.3702
68718571022
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
83.4646
98.7578
72.2727
36.0465
15921596161
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
99.4371
99.6241
99.2509
82.1762
265126521
50.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.6785
100.0000
99.3590
84.2105
155015510
0.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.2973
97.2973
97.2973
62.2449
3613611
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.0388
7407400
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
94.6429
92.9825
96.3636
99.4786
5345320
0.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
92.6829
90.4762
95.0000
99.3670
3843820
0.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.1728
90900
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8090
60600
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3750
99.1863
99.5644
51.3896
36573036571613
81.2500
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.4857
99.3958
99.5758
60.5358
164510164374
57.1429
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.9371
98.3926
99.4876
28.2475
116319116566
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7650
99.8824
99.6479
51.1188
849184933
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
97.7458
97.3384
98.1567
52.5683
12803512782417
70.8333
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
97.2266
98.4848
96.0000
75.7282
3255312137
53.8462
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.7006
96.2169
99.2308
24.4186
7633077466
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
98.7147
100.0000
97.4619
47.3262
192019254
80.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7395
99.5954
99.8841
36.0267
17237172422
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.6431
99.2888
100.0000
46.4313
698569800
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.8285
99.6575
100.0000
18.3473
582258300
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7748
100.0000
99.5506
34.6549
443044322
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
97.5038
96.4789
98.5507
46.5116
137513621
50.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
93.7037
95.8333
91.6667
76.6990
2312221
50.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.8947
95.8763
100.0000
23.1405
9349300
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
38.2353
2102100
astatham-gatkINDELD6_15map_l100_m0_e0*
96.1538
97.0874
95.2381
90.1961
100310051
20.0000
astatham-gatkINDELD6_15map_l100_m0_e0het
95.1613
98.3333
92.1875
91.2449
5915951
20.0000
astatham-gatkINDELD6_15map_l100_m0_e0hetalt
97.2973
94.7368
100.0000
82.3529
1811800
astatham-gatkINDELD6_15map_l100_m0_e0homalt
97.8723
95.8333
100.0000
90.3361
2312300
astatham-gatkINDELD6_15map_l100_m1_e0*
96.3107
96.1240
96.4981
87.2076
2481024892
22.2222
astatham-gatkINDELD6_15map_l100_m1_e0het
95.3488
97.6190
93.1818
89.9772
123312392
22.2222