PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81701-81750 / 86044 show all
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8480
100.0000
99.6965
80.1924
657065720
0.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.2973
97.2973
97.2973
87.7483
3613611
100.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
81.9648
369036900
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.6966
92.5757
96.9171
59.1377
223217922327167
94.3662
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.5536
96.0864
97.0255
75.2541
712296852118
85.7143
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.7749
88.6135
99.5748
31.3084
1144147117155
100.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
94.0000
99.2084
89.3112
60.6909
37633764544
97.7778
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.1132
10100
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.3684
10100
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.0729
97.4752
98.6779
47.9442
2007652020077269262
97.3978
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.8560
99.1874
98.5268
58.9697
7324607290109104
95.4128
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9440
94.4163
99.6108
25.7275
764345276783029
96.6667
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6674
99.8437
97.5186
50.9181
510985109130129
99.2308
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.4990
98.1160
98.8851
46.7540
1791534417916202197
97.5248
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.0900
99.5359
98.6480
56.8443
66483166409188
96.7033
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.5098
95.4885
99.6185
24.8854
651930865282524
96.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0508
99.8948
98.2209
50.1958
4748547488685
98.8372
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.1514
97.5955
98.7136
53.8931
2171553521716283267
94.3463
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8871
99.2258
98.5507
63.9239
8331658296122109
89.3443
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9287
94.3839
99.6144
27.9429
771445977503029
96.6667
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7633
99.8064
97.7418
57.2891
5670115670131129
98.4733
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5076
98.0387
98.9810
60.6867
3079261630792317296
93.3754
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.1235
99.2295
99.0178
67.7817
1365110613609135117
86.6667
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0603
94.6723
99.5719
32.5070
879649588383837
97.3684
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0563
99.8206
98.3037
63.5993
8345158345144142
98.6111
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.7654
98.4474
99.0855
41.1980
2415938124161223213
95.5157
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.2803
99.4811
99.0803
50.1719
1035354103429688
91.6667
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3908
95.3819
99.4860
25.9321
656831865813433
97.0588
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.3003
99.8758
98.7314
36.7417
7238972389392
98.9247
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
82.3360
76.6141
88.9816
53.1299
5341635336665
98.4848
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
83.4086
85.9259
81.0345
77.5629
11619942221
95.4545
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
82.9090
71.0794
99.4624
29.2776
34914237022
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
75.8242
97.1831
62.1622
52.7660
692694242
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8303
99.7319
99.9289
55.1102
2529168252941812
66.6667
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8000
99.6479
99.9525
54.9426
14718521472071
14.2857
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
98.1559
97.0803
99.2556
71.3778
3991240033
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9411
99.9607
99.9214
54.3285
1017441017488
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9920
10100
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.7010
99.6632
99.7389
50.8366
1183540118403116
51.6129
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7024
99.7469
99.6579
53.4220
6699176701238
34.7826
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.1576
98.5265
99.7969
32.7413
147122147433
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9727
99.8638
51.1578
36651366555
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
98.2021
97.5649
98.8477
61.4163
12023012011412
85.7143
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
97.8944
97.9221
97.8667
79.3046
377836787
87.5000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
98.0558
96.7692
99.3769
23.2975
6292163844
100.0000