PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81651-81700 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | D1_5 | * | * | 99.5682 | 99.4433 | 99.6934 | 60.4898 | 145928 | 817 | 145983 | 449 | 317 | 70.6013 | |
| astatham-gatk | INDEL | D1_5 | * | het | 99.6974 | 99.6803 | 99.7145 | 58.9760 | 87294 | 280 | 87301 | 250 | 122 | 48.8000 | |
| astatham-gatk | INDEL | D1_5 | * | hetalt | 97.2343 | 95.0220 | 99.5520 | 63.2355 | 9735 | 510 | 9778 | 44 | 43 | 97.7273 | |
| astatham-gatk | INDEL | D1_5 | * | homalt | 99.8143 | 99.9448 | 99.6841 | 62.4034 | 48899 | 27 | 48904 | 155 | 152 | 98.0645 | |
| astatham-gatk | INDEL | D1_5 | HG002complexvar | * | 99.5714 | 99.3825 | 99.7611 | 58.5986 | 32513 | 202 | 32567 | 78 | 66 | 84.6154 | |
| astatham-gatk | INDEL | D1_5 | HG002complexvar | het | 99.6863 | 99.4751 | 99.8985 | 56.1634 | 20656 | 109 | 20662 | 21 | 12 | 57.1429 | |
| astatham-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 95.3253 | 93.9349 | 96.7576 | 72.9412 | 1270 | 82 | 1313 | 44 | 43 | 97.7273 | |
| astatham-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.8868 | 99.8962 | 99.8774 | 60.2109 | 10587 | 11 | 10592 | 13 | 11 | 84.6154 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | * | 96.5582 | 95.6110 | 97.5244 | 66.3015 | 11698 | 537 | 11700 | 297 | 294 | 98.9899 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | het | 96.0425 | 98.2639 | 93.9193 | 78.7076 | 1698 | 30 | 1699 | 110 | 109 | 99.0909 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 97.2654 | 95.0470 | 99.5898 | 58.5927 | 9710 | 506 | 9711 | 40 | 39 | 97.5000 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 79.6703 | 99.6564 | 66.3616 | 87.7109 | 290 | 1 | 290 | 147 | 146 | 99.3197 | |
| astatham-gatk | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9387 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9567 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6377 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9387 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 40.7407 | 159 | 0 | 160 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.5839 | 85 | 0 | 86 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.4815 | 74 | 0 | 74 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.2962 | 93.5743 | 97.0826 | 62.0727 | 3728 | 256 | 3727 | 112 | 102 | 91.0714 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7394 | 96.9504 | 96.5293 | 75.1304 | 1367 | 43 | 1335 | 48 | 39 | 81.2500 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.8248 | 88.7486 | 99.5169 | 32.2699 | 1617 | 205 | 1648 | 8 | 8 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.8763 | 98.9362 | 93.0000 | 62.1928 | 744 | 8 | 744 | 56 | 55 | 98.2143 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8718 | 11 | 0 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7076 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.3730 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3672 | 99.1883 | 99.5468 | 74.2740 | 63908 | 523 | 63921 | 291 | 257 | 88.3162 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.5983 | 99.6119 | 99.5848 | 74.9525 | 33107 | 129 | 33101 | 138 | 106 | 76.8116 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7103 | 95.9230 | 99.5655 | 64.4709 | 8917 | 379 | 8936 | 39 | 38 | 97.4359 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7061 | 99.9315 | 99.4818 | 75.9939 | 21884 | 15 | 21884 | 114 | 113 | 99.1228 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.5076 | 98.0387 | 98.9810 | 60.6867 | 30792 | 616 | 30792 | 317 | 296 | 93.3754 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.1235 | 99.2295 | 99.0178 | 67.7817 | 13651 | 106 | 13609 | 135 | 117 | 86.6667 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0603 | 94.6723 | 99.5719 | 32.5070 | 8796 | 495 | 8838 | 38 | 37 | 97.3684 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0563 | 99.8206 | 98.3037 | 63.5993 | 8345 | 15 | 8345 | 144 | 142 | 98.6111 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8892 | 97.3753 | 98.4085 | 66.7402 | 742 | 20 | 742 | 12 | 7 | 58.3333 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2818 | 98.6207 | 97.9452 | 69.3920 | 429 | 6 | 429 | 9 | 4 | 44.4444 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.3386 | 84.0580 | 100.0000 | 55.7252 | 58 | 11 | 58 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8372 | 98.8372 | 98.8372 | 63.4043 | 255 | 3 | 255 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9166 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7952 | 7 | 0 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.3548 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5144 | 99.6757 | 99.3536 | 78.0162 | 1537 | 5 | 1537 | 10 | 5 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5680 | 100.0000 | 99.1398 | 77.7565 | 922 | 0 | 922 | 8 | 3 | 37.5000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 81.3953 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7250 | 99.6337 | 99.8165 | 77.9263 | 544 | 2 | 544 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8120 | 99.9059 | 99.7183 | 81.2335 | 1062 | 1 | 1062 | 3 | 1 | 33.3333 | |