PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81001-81050 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 61.2378 | 120 | 2 | 119 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 24.9211 | 237 | 0 | 238 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.0244 | 59 | 0 | 59 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 70.0000 | 12 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 40.0000 | 11 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 92.0635 | 87.8788 | 96.6667 | 92.5558 | 29 | 4 | 29 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 90.9091 | 88.2353 | 93.7500 | 93.5223 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.1765 | 3 | 1 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 90.9836 | 11 | 1 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 95.9641 | 93.8596 | 98.1651 | 87.8348 | 107 | 7 | 107 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 94.8276 | 93.2203 | 96.4912 | 88.7352 | 55 | 4 | 55 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.6514 | 20 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.6121 | 32 | 1 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.0352 | 93.9655 | 98.1982 | 88.6735 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0000 | 93.4426 | 96.6102 | 89.2139 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.6066 | 20 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.7106 | 32 | 1 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 96.0352 | 93.9655 | 98.1982 | 88.9442 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0000 | 93.4426 | 96.6102 | 89.4454 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.1270 | 20 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9687 | 32 | 1 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 85.7143 | 80.0000 | 92.3077 | 95.6667 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 95.8115 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.5055 | 5 | 1 | 5 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.2039 | 90.5660 | 96.0000 | 91.9094 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.1622 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 86.5385 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.8571 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.7641 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.8395 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.7220 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.2039 | 90.5660 | 96.0000 | 92.9478 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 91.5254 | 90.0000 | 93.1034 | 92.9782 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9394 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.1660 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.5309 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.8904 | 3 | 1 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.3252 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.4248 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.0265 | 6 | 1 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.8106 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.8333 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 3 | 0 | 3 | 0 | 0 | ||