PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80901-80950 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2442 | 88.7931 | 98.1651 | 89.8793 | 103 | 13 | 107 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.3908 | 88.5246 | 96.6102 | 90.6051 | 54 | 7 | 57 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.6446 | 20 | 2 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.5484 | 87.8788 | 100.0000 | 91.1585 | 29 | 4 | 29 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 81.7337 | 73.3333 | 92.3077 | 96.1310 | 11 | 4 | 12 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 82.9630 | 77.7778 | 88.8889 | 95.9641 | 7 | 2 | 8 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.6522 | 4 | 2 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 87.5000 | 79.2453 | 97.6744 | 93.5435 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.2029 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.0370 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 93.9394 | 12 | 3 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 87.5000 | 79.2453 | 97.6744 | 94.2513 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.7598 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 94.6667 | 12 | 3 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 87.5000 | 79.2453 | 97.6744 | 94.4156 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 85.1852 | 76.6667 | 95.8333 | 94.8827 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.5522 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 88.8889 | 80.0000 | 100.0000 | 94.8718 | 12 | 3 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 72.2892 | 62.5000 | 85.7143 | 97.4729 | 5 | 3 | 6 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 97.3545 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.2973 | 2 | 2 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.4618 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.5517 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.3510 | 4 | 3 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.8333 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.8504 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4783 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.6879 | 4 | 3 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 96.6346 | 20 | 7 | 20 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 96.7089 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 76.9231 | 62.5000 | 100.0000 | 97.2376 | 5 | 3 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.2806 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.9691 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 67.7966 | 57.1429 | 83.3333 | 98.1928 | 4 | 3 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 77.4194 | 75.0000 | 80.0000 | 97.7376 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.9130 | 1 | 2 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 98.3380 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.9424 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.9691 | 1 | 2 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.4127 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 98.0315 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |