PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80701-80750 / 86044 show all
asubramanian-gatkSNPtitech_badpromoters*
98.8235
98.8235
98.8235
45.1613
8418411
100.0000
asubramanian-gatkSNPtitech_badpromotershet
98.8506
97.7273
100.0000
48.1928
4314300
asubramanian-gatkSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
41.6667
4104111
100.0000
asubramanian-gatkSNPtv**
98.7904
97.7276
99.8765
24.3508
94765522035947577117261
5.2048
asubramanian-gatkSNPtv*het
98.8211
97.8557
99.8057
26.7081
57900812688578944112742
3.7267
asubramanian-gatkSNPtv*hetalt
95.7533
94.4891
97.0519
45.7454
82348823252
8.0000
asubramanian-gatkSNPtv*homalt
98.7491
97.5342
99.9946
20.2324
36782492993678102017
85.0000
asubramanian-gatkSNPtvHG002complexvar*
98.0754
96.2442
99.9776
22.6117
23690792452368245318
33.9623
asubramanian-gatkSNPtvHG002complexvarhet
98.1875
96.4619
99.9759
22.1458
14539853331453293510
28.5714
asubramanian-gatkSNPtvHG002complexvarhetalt
94.3522
91.6129
97.2603
39.0397
2842628480
0.0000
asubramanian-gatkSNPtvHG002complexvarhomalt
97.9093
95.9142
99.9890
23.2773
91225388691211108
80.0000
asubramanian-gatkSNPtvHG002compoundhet*
98.0032
96.5370
99.5145
49.4980
861430986094211
26.1905
asubramanian-gatkSNPtvHG002compoundhethet
98.0320
96.4691
99.6463
55.8548
45081654508169
56.2500
asubramanian-gatkSNPtvHG002compoundhethetalt
95.8824
94.5476
97.2554
25.0447
81547815230
0.0000
asubramanian-gatkSNPtvHG002compoundhethomalt
98.5034
97.1370
99.9088
42.9389
329197328632
66.6667
asubramanian-gatkSNPtvdecoy*
0.0000
100.0000
00000
asubramanian-gatkSNPtvdecoyhet
0.0000
100.0000
00000
asubramanian-gatkSNPtvdecoyhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvdecoyhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvfunc_cds*
99.5422
99.4967
99.5877
36.6971
4349224348180
0.0000
asubramanian-gatkSNPtvfunc_cdshet
99.4171
99.5107
99.3236
42.1899
2644132643180
0.0000
asubramanian-gatkSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
58.3333
1001000
asubramanian-gatkSNPtvfunc_cdshomalt
99.7352
99.4718
100.0000
25.3304
16959169500
asubramanian-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.8074
98.3509
99.2681
69.2197
1491251492112
18.1818
asubramanian-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.6791
97.8831
99.4882
71.3069
9712197252
40.0000
asubramanian-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
75.0000
00060
0.0000
asubramanian-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6169
99.2366
100.0000
64.2366
520452000
asubramanian-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0957
98.9522
99.2395
65.0592
273882902740321022
10.4762
asubramanian-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9673
98.9982
98.9364
66.6862
173921761739518718
9.6257
asubramanian-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
53.3333
92.3077
37.5000
79.6178
12112201
5.0000
asubramanian-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4224
98.8809
99.9700
61.6808
9984113999633
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2216
97.3921
99.0654
77.9808
141913801420413416
11.9403
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.9134
97.0765
98.7647
80.5287
8866267887511113
11.7117
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
60.0000
100.0000
42.8571
84.3049
15015200
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9195
97.9163
99.9436
71.6321
5310113531433
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3985
98.9521
99.8489
49.8485
132214132220
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2357
98.7135
99.7636
51.8223
8441184420
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.6872
99.3763
100.0000
45.8664
478347800
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6549
99.6320
99.6779
64.1892
21668216670
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5315
99.5674
99.4957
65.2740
13816138170
0.0000