PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8001-8050 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | * | 96.3855 | 96.0961 | 96.6767 | 99.5648 | 320 | 13 | 320 | 11 | 3 | 27.2727 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | het | 95.7346 | 95.7346 | 95.7346 | 95.8193 | 202 | 9 | 202 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 98.0469 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 95.2243 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | map_siren | * | 97.7903 | 97.6113 | 97.9700 | 96.5183 | 7233 | 177 | 7239 | 150 | 78 | 52.0000 | |
| ndellapenna-hhga | INDEL | * | map_siren | het | 97.8580 | 98.1145 | 97.6028 | 80.6313 | 4423 | 85 | 4438 | 109 | 50 | 45.8716 | |
| ndellapenna-hhga | INDEL | * | map_siren | hetalt | 85.8846 | 78.1377 | 95.3368 | 88.2532 | 193 | 54 | 184 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | * | map_siren | homalt | 98.6802 | 98.5687 | 98.7920 | 79.0989 | 2617 | 38 | 2617 | 32 | 23 | 71.8750 | |
| ndellapenna-hhga | INDEL | * | segdup | * | 97.8664 | 97.7308 | 98.0024 | 98.7178 | 2498 | 58 | 2502 | 51 | 37 | 72.5490 | |
| ndellapenna-hhga | INDEL | * | segdup | het | 97.9748 | 98.6357 | 97.3226 | 94.1248 | 1446 | 20 | 1454 | 40 | 27 | 67.5000 | |
| ndellapenna-hhga | INDEL | * | segdup | hetalt | 85.5736 | 75.3846 | 98.9474 | 95.6039 | 98 | 32 | 94 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | segdup | homalt | 99.1684 | 99.3750 | 98.9627 | 93.3714 | 954 | 6 | 954 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9993 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9951 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | tech_badpromoters | * | 97.3333 | 96.0526 | 98.6486 | 91.8051 | 73 | 3 | 73 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | het | 97.4359 | 97.4359 | 97.4359 | 49.3506 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | hetalt | 85.7143 | 75.0000 | 100.0000 | 57.1429 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 60.4938 | 32 | 1 | 32 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C16_PLUS | * | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | * | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||