PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80351-80400 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 96.7204 | 94.1080 | 99.4819 | 84.5641 | 575 | 36 | 576 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 93.0516 | 89.7370 | 96.6205 | 87.5894 | 1740 | 199 | 1744 | 61 | 7 | 11.4754 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 91.0922 | 87.4606 | 95.0385 | 88.5235 | 1109 | 159 | 1111 | 58 | 6 | 10.3448 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 96.9697 | 94.1176 | 100.0000 | 90.9259 | 48 | 3 | 49 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 96.6837 | 94.0323 | 99.4889 | 84.6255 | 583 | 37 | 584 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 91.3934 | 89.9194 | 92.9167 | 91.3840 | 446 | 50 | 446 | 34 | 2 | 5.8824 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 89.7661 | 88.9855 | 90.5605 | 92.0254 | 307 | 38 | 307 | 32 | 1 | 3.1250 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8571 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 95.1049 | 91.8919 | 98.5507 | 88.3051 | 136 | 12 | 136 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 91.7244 | 88.6029 | 95.0739 | 89.7371 | 964 | 124 | 965 | 50 | 5 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 89.7485 | 86.7769 | 92.9308 | 90.5838 | 630 | 96 | 631 | 48 | 4 | 8.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 96.0784 | 12 | 1 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 95.6909 | 92.2636 | 99.3827 | 86.3464 | 322 | 27 | 322 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 91.8425 | 88.6264 | 95.3008 | 90.1645 | 1013 | 130 | 1014 | 50 | 5 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 89.8280 | 86.6492 | 93.2489 | 90.9553 | 662 | 102 | 663 | 48 | 4 | 8.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.9770 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 95.8748 | 92.5824 | 99.4100 | 87.0065 | 337 | 27 | 337 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 91.8963 | 88.6776 | 95.3575 | 90.2011 | 1026 | 131 | 1027 | 50 | 5 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 89.9101 | 86.7532 | 93.3054 | 91.0049 | 668 | 102 | 669 | 48 | 4 | 8.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 96.0894 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 95.8217 | 92.4731 | 99.4220 | 87.0023 | 344 | 28 | 344 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 90.0178 | 90.3114 | 89.7260 | 93.4821 | 261 | 28 | 262 | 30 | 2 | 6.6667 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 88.8889 | 91.0891 | 86.7925 | 93.8746 | 184 | 18 | 184 | 28 | 1 | 3.5714 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1818 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 92.6076 | 88.2353 | 97.4359 | 91.4191 | 75 | 10 | 76 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 90.2430 | 87.0293 | 93.7031 | 91.7133 | 624 | 93 | 625 | 42 | 5 | 11.9048 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 88.2318 | 85.4772 | 91.1700 | 92.4108 | 412 | 70 | 413 | 40 | 4 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5000 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.4954 | 90.3509 | 99.0385 | 88.6957 | 206 | 22 | 206 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 90.5545 | 87.2870 | 94.0762 | 92.0578 | 666 | 97 | 667 | 42 | 5 | 11.9048 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 88.6513 | 85.7977 | 91.7012 | 92.6948 | 441 | 73 | 442 | 40 | 4 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.8102 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.6004 | 90.4959 | 99.0950 | 89.2457 | 219 | 23 | 219 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 90.5975 | 87.2751 | 94.1828 | 92.0590 | 679 | 99 | 680 | 42 | 5 | 11.9048 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 88.6104 | 85.6322 | 91.8033 | 92.7262 | 447 | 75 | 448 | 40 | 4 | 10.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.5265 | 7 | 1 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.7368 | 90.7258 | 99.1189 | 89.1905 | 225 | 23 | 225 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 83.1683 | 91.3043 | 76.3636 | 97.8209 | 42 | 4 | 42 | 13 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 80.0000 | 90.9091 | 71.4286 | 97.8582 | 30 | 3 | 30 | 12 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 92.3077 | 92.3077 | 92.3077 | 97.4206 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 86.5497 | 86.5497 | 86.5497 | 96.4640 | 148 | 23 | 148 | 23 | 2 | 8.6957 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 83.8428 | 86.4865 | 81.3559 | 96.8108 | 96 | 15 | 96 | 22 | 2 | 9.0909 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 91.5888 | 85.9649 | 98.0000 | 95.0348 | 49 | 8 | 49 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 86.8852 | 86.4130 | 87.3626 | 96.6544 | 159 | 25 | 159 | 23 | 2 | 8.6957 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 84.6774 | 86.7769 | 82.6772 | 96.9287 | 105 | 16 | 105 | 22 | 2 | 9.0909 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1013 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 91.0714 | 85.0000 | 98.0769 | 95.4664 | 51 | 9 | 51 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 86.6485 | 85.9459 | 87.3626 | 96.7337 | 159 | 26 | 159 | 23 | 2 | 8.6957 | |