PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
79801-79850 / 86044 show all
asubramanian-gatkSNP*map_l125_m1_e0hetalt
37.8378
23.3333
100.0000
93.2692
723700
asubramanian-gatkSNP*map_l125_m1_e0homalt
40.5846
25.4599
99.9768
87.4504
430412601430410
0.0000
asubramanian-gatkSNP*map_l125_m2_e0*
47.7392
31.3764
99.7686
91.5938
146603206314657348
23.5294
asubramanian-gatkSNP*map_l125_m2_e0het
50.9572
34.2281
99.6721
92.5837
100351928310032338
24.2424
asubramanian-gatkSNP*map_l125_m2_e0hetalt
37.8378
23.3333
100.0000
94.6970
723700
asubramanian-gatkSNP*map_l125_m2_e0homalt
41.9933
26.5784
99.9784
88.1315
461812757461810
0.0000
asubramanian-gatkSNP*map_l125_m2_e1*
47.9740
31.5792
99.7724
91.5607
149063229614903348
23.5294
asubramanian-gatkSNP*map_l125_m2_e1het
51.2109
34.4568
99.6778
92.5521
102131942710210338
24.2424
asubramanian-gatkSNP*map_l125_m2_e1hetalt
37.8378
23.3333
100.0000
94.6970
723700
asubramanian-gatkSNP*map_l125_m2_e1homalt
42.1801
26.7283
99.9787
88.0838
468612846468610
0.0000
asubramanian-gatkSNP*map_l150_m0_e0*
31.2706
18.5422
99.7318
96.8590
22319801223163
50.0000
asubramanian-gatkSNP*map_l150_m0_e0het
34.0434
20.5290
99.6333
97.2059
16306310163063
50.0000
asubramanian-gatkSNP*map_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.0000
12100
asubramanian-gatkSNP*map_l150_m0_e0homalt
25.5918
14.6735
100.0000
95.2449
600348960000
asubramanian-gatkSNP*map_l150_m1_e0*
38.6014
23.9309
99.7548
94.4087
7325232847322185
27.7778
asubramanian-gatkSNP*map_l150_m1_e0het
41.8810
26.5117
99.6495
95.0572
5121141955118185
27.7778
asubramanian-gatkSNP*map_l150_m1_e0hetalt
40.0000
25.0000
100.0000
94.6237
515500
asubramanian-gatkSNP*map_l150_m1_e0homalt
32.6455
19.5068
100.0000
91.9371
21999074219900
asubramanian-gatkSNP*map_l150_m2_e0*
40.2806
25.2386
99.7022
94.5086
8039238138036246
25.0000
asubramanian-gatkSNP*map_l150_m2_e0het
43.4711
27.8051
99.5729
95.1282
5598145355595246
25.0000
asubramanian-gatkSNP*map_l150_m2_e0hetalt
40.0000
25.0000
100.0000
95.6140
515500
asubramanian-gatkSNP*map_l150_m2_e0homalt
34.4676
20.8223
100.0000
92.2232
24369263243600
asubramanian-gatkSNP*map_l150_m2_e1*
40.4494
25.3710
99.7071
94.4964
8172240388169246
25.0000
asubramanian-gatkSNP*map_l150_m2_e1het
43.6280
27.9330
99.5796
95.1225
5688146755685246
25.0000
asubramanian-gatkSNP*map_l150_m2_e1hetalt
40.0000
25.0000
100.0000
95.6140
515500
asubramanian-gatkSNP*map_l150_m2_e1homalt
34.6568
20.9605
100.0000
92.1810
24799348247900
asubramanian-gatkSNP*map_l250_m0_e0*
30.8789
18.2670
99.7442
99.0504
390174539011
100.0000
asubramanian-gatkSNP*map_l250_m0_e0het
31.5260
18.7251
99.6466
99.1633
282122428211
100.0000
asubramanian-gatkSNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
asubramanian-gatkSNP*map_l250_m0_e0homalt
29.3080
17.1701
100.0000
98.5248
10852110800
asubramanian-gatkSNP*map_l250_m1_e0*
30.3884
17.9313
99.5388
98.3683
12955927129561
16.6667
asubramanian-gatkSNP*map_l250_m1_e0het
32.3296
19.3060
99.3506
98.5655
918383791861
16.6667
asubramanian-gatkSNP*map_l250_m1_e0hetalt
0.0000
100.0000
04000
asubramanian-gatkSNP*map_l250_m1_e0homalt
26.5493
15.3065
100.0000
97.5301
377208637700
asubramanian-gatkSNP*map_l250_m2_e0*
31.9242
19.0108
99.5352
98.3542
14996386149971
14.2857
asubramanian-gatkSNP*map_l250_m2_e0het
33.8604
20.4082
99.3440
98.5469
10604134106071
14.2857
asubramanian-gatkSNP*map_l250_m2_e0hetalt
33.3333
20.0000
100.0000
98.5915
14100
asubramanian-gatkSNP*map_l250_m2_e0homalt
28.0410
16.3068
100.0000
97.5677
438224843800
asubramanian-gatkSNP*map_l250_m2_e1*
32.0765
19.1186
99.5437
98.3572
15276460152771
14.2857
asubramanian-gatkSNP*map_l250_m2_e1het
34.0104
20.5167
99.3560
98.5506
10804184108071
14.2857
asubramanian-gatkSNP*map_l250_m2_e1hetalt
33.3333
20.0000
100.0000
98.5915
14100
asubramanian-gatkSNP*map_l250_m2_e1homalt
28.1922
16.4091
100.0000
97.5636
446227244600
asubramanian-gatkSNP*map_siren*
76.4845
61.9738
99.8677
70.7590
90623556059060512035
29.1667
asubramanian-gatkSNP*map_sirenhet
78.4554
64.6317
99.8014
73.5808
58809321825880011733
28.2051
asubramanian-gatkSNP*map_sirenhetalt
65.0000
48.1481
100.0000
84.2105
39423900
asubramanian-gatkSNP*map_sirenhomalt
73.1014
57.6093
99.9906
63.4885
31775233813176632
66.6667
asubramanian-gatkSNP*segdup*
98.1237
96.8005
99.4836
92.0357
271698982716314114
9.9291
asubramanian-gatkSNP*segduphet
98.0720
96.9394
99.2313
93.3046
16787530167811304
3.0769
asubramanian-gatkSNP*segduphetalt
92.3077
85.7143
100.0000
97.5309
61600
asubramanian-gatkSNP*segduphomalt
98.2111
96.5838
99.8941
88.4606
10376367103761110
90.9091