PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
79751-79800 / 86044 show all
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.2719
98.8007
99.7476
56.4979
1697120616992436
13.9535
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3297
98.9174
99.7455
57.3296
1096412010972283
10.7143
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1659
98.5874
99.7512
54.8686
6002866015153
20.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
98.4506
98.8726
98.0323
41.8823
17978205179853614
1.1080
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.0571
98.8804
97.2473
44.6639
11305128113053203
0.9375
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
76.9231
100.0000
62.5000
69.2308
50531
33.3333
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.1453
98.8584
99.4339
36.2670
6668776675380
0.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200*
82.5309
93.0070
74.1758
91.4794
13310135473
6.3830
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200het
85.4071
93.1373
78.8618
92.1305
95797263
11.5385
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
57.1429
00030
0.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
78.3505
92.6829
67.8571
90.1060
38338180
0.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.1282
98.9531
99.3039
35.7393
7278777276513
5.8824
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.0021
98.8951
99.1093
37.8896
4565514562412
4.8781
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.3592
99.0869
99.6329
31.6608
2713252714101
10.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200*
95.2381
100.0000
90.9091
95.2790
901010
0.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.8718
70800
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
80.0000
100.0000
66.6667
96.0526
20210
0.0000
asubramanian-gatkSNP*map_l100_m0_e0*
45.8193
29.7342
99.8160
91.0946
9765230769765186
33.3333
asubramanian-gatkSNP*map_l100_m0_e0het
48.7115
32.2235
99.7518
92.2778
6833143726833176
35.2941
asubramanian-gatkSNP*map_l100_m0_e0hetalt
31.5789
18.7500
100.0000
95.2381
313300
asubramanian-gatkSNP*map_l100_m0_e0homalt
40.2612
25.2065
99.9659
86.1052
29298691292910
0.0000
asubramanian-gatkSNP*map_l100_m1_e0*
60.2018
43.0908
99.8527
84.6729
3119941204311934612
26.0870
asubramanian-gatkSNP*map_l100_m1_e0het
63.0315
46.0636
99.7898
86.5707
2089424465208884412
27.2727
asubramanian-gatkSNP*map_l100_m1_e0hetalt
48.1481
31.7073
100.0000
90.9091
13281300
asubramanian-gatkSNP*map_l100_m1_e0homalt
55.1894
38.1143
99.9806
78.4662
10292167111029220
0.0000
asubramanian-gatkSNP*map_l100_m2_e0*
60.9821
43.8984
99.8339
85.3165
3246941495324635414
25.9259
asubramanian-gatkSNP*map_l100_m2_e0het
63.7840
46.8782
99.7614
87.0574
2175124648217455214
26.9231
asubramanian-gatkSNP*map_l100_m2_e0hetalt
50.0000
33.3333
100.0000
91.3043
14281400
asubramanian-gatkSNP*map_l100_m2_e0homalt
55.9994
38.8911
99.9813
79.7534
10704168191070420
0.0000
asubramanian-gatkSNP*map_l100_m2_e1*
61.2013
44.1254
99.8365
85.2564
3297841759329725414
25.9259
asubramanian-gatkSNP*map_l100_m2_e1het
64.0057
47.1171
99.7652
87.0062
2209724801220915214
26.9231
asubramanian-gatkSNP*map_l100_m2_e1hetalt
51.7241
34.8837
100.0000
90.7407
15281500
asubramanian-gatkSNP*map_l100_m2_e1homalt
56.2073
39.0920
99.9816
79.6586
10866169301086620
0.0000
asubramanian-gatkSNP*map_l125_m0_e0*
35.5829
21.6508
99.8098
95.1193
419715188419785
62.5000
asubramanian-gatkSNP*map_l125_m0_e0het
38.5630
23.9024
99.7364
95.6908
30279637302785
62.5000
asubramanian-gatkSNP*map_l125_m0_e0hetalt
20.0000
11.1111
100.0000
98.1818
18100
asubramanian-gatkSNP*map_l125_m0_e0homalt
29.6663
17.4166
100.0000
92.5404
11695543116900
asubramanian-gatkSNP*map_l125_m1_e0*
46.3852
30.2138
99.8032
91.3119
136953163213692276
22.2222
asubramanian-gatkSNP*map_l125_m1_e0het
49.6482
33.0516
99.7236
92.3828
9384190089381266
23.0769