PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
79701-79750 / 86044 show all
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
44.7761
100.0000
28.8462
82.9508
15015370
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.0342
97.2312
98.8506
67.1730
16505470165131924
2.0833
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.0423
98.7194
99.3672
50.0468
4240554240272
7.4074
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.8986
98.6225
99.1763
52.8592
2649372649221
4.5455
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.2824
98.8813
99.6867
44.4483
159118159151
20.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2985
99.5634
99.0351
56.4261
6157276158601
1.6667
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.1387
99.5421
98.7386
58.2561
3913183914501
2.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
10100
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.5782
99.6004
99.5561
52.7078
224392243100
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4605
99.8195
99.1042
60.8242
387173872350
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.3018
99.7594
98.8483
62.1581
248862489290
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
10100
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7474
99.9277
99.5677
58.0918
13821138260
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
87.2342
94.3005
81.1530
90.5033
36422366853
3.5294
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
88.1816
92.7536
84.0391
90.9546
25620258493
6.1225
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
69.6970
000100
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.5246
98.1818
80.5970
89.8638
1082108260
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
92.4584
97.6813
87.7658
87.3735
265463268337417
4.5455
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.0177
97.5624
88.8776
88.4848
172143174221816
7.3395
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
10.5263
100.0000
5.5556
77.5000
202340
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.9624
97.8970
88.5014
84.9075
931209391221
0.8197
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
93.2622
98.0574
88.9141
86.8298
232246235029314
4.7782
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
93.7915
98.1506
89.8032
88.0725
148628150617113
7.6023
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
14.2857
100.0000
7.6923
79.6875
202240
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.5466
97.8873
89.5745
84.0136
83418842981
1.0204
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4310
98.7964
96.1027
79.7737
106711301070243419
4.3779
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.4385
98.6779
96.2299
81.4052
679291681526717
6.3670
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
15.0000
100.0000
8.1081
79.4444
303340
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8328
99.0038
96.6891
76.0765
38763938841332
1.5038
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6076
97.1467
98.0729
73.4952
4439813044442887338
4.3528
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.4185
97.0953
97.7438
76.1583
278788342790064434
5.2795
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
44.7761
100.0000
28.8462
82.9508
15015370
0.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.0342
97.2312
98.8506
67.1730
16505470165131924
2.0833
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50*
97.5888
98.8754
96.3352
68.5340
9583109962136621
5.7377
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
97.8322
98.8294
96.8550
70.8320
616373619020120
9.9503
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
6.8966
100.0000
3.5714
80.5556
101270
0.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
97.5247
98.9580
96.1323
63.1557
34193634301381
0.7246
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200*
77.2277
92.8571
66.1017
96.4046
39339200
0.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200het
87.2727
88.8889
85.7143
97.6549
2432440
0.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
75.0000
00070
0.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
76.9231
100.0000
62.5000
94.2721
1501590
0.0000