PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
78601-78650 / 86044 show all
asubramanian-gatkINDELD1_5**
99.2637
98.9281
99.6016
61.0980
1451721573145253581383
65.9208
asubramanian-gatkINDELD1_5*het
99.3754
99.1025
99.6499
59.9427
8678878686804305126
41.3115
asubramanian-gatkINDELD1_5*hetalt
96.4051
93.9092
99.0373
64.2371
962162496709488
93.6170
asubramanian-gatkINDELD1_5*homalt
99.6476
99.6668
99.6283
62.3701
4876316348779182169
92.8571
asubramanian-gatkINDELD1_5HG002complexvar*
99.2090
98.6948
99.7287
58.8075
32288427323478875
85.2273
asubramanian-gatkINDELD1_5HG002complexvarhet
99.2391
98.6082
99.8781
56.4759
20476289204842515
60.0000
asubramanian-gatkINDELD1_5HG002complexvarhetalt
94.5568
92.7515
96.4339
73.6698
12549812984847
97.9167
asubramanian-gatkINDELD1_5HG002complexvarhomalt
99.7403
99.6226
99.8582
60.0860
1055840105651513
86.6667
asubramanian-gatkINDELD1_5HG002compoundhet*
95.6905
94.4340
96.9809
66.6013
1155468111564360339
94.1667
asubramanian-gatkINDELD1_5HG002compoundhethet
95.2389
96.5856
93.9292
78.7201
1669591671108103
95.3704
asubramanian-gatkINDELD1_5HG002compoundhethetalt
96.4959
93.9311
99.2046
59.5968
959662096047771
92.2078
asubramanian-gatkINDELD1_5HG002compoundhethomalt
76.5563
99.3127
62.2845
86.2762
2892289175165
94.2857
asubramanian-gatkINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9607
40400
asubramanian-gatkINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9759
20200
asubramanian-gatkINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.6183
10100
asubramanian-gatkINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9387
10100
asubramanian-gatkINDELD1_5func_cds*
100.0000
100.0000
100.0000
50.6173
159016000
asubramanian-gatkINDELD1_5func_cdshet
100.0000
100.0000
100.0000
59.8131
8508600
asubramanian-gatkINDELD1_5func_cdshetalt
0.0000
100.0000
00000
asubramanian-gatkINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
32.1101
7407400
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0814
91.6918
96.5990
62.3710
36533313664129115
89.1473
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.7489
95.0355
96.4732
75.4199
13407013134837
77.0833
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.2194
86.3886
98.8943
32.6995
157424816101816
88.8889
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.1198
98.2713
92.1642
62.1469
739137416362
98.4127
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8741
1101100
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7421
80800
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.2973
10100
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3421
20200
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9428
98.4681
99.4221
74.5651
6344498763485369305
82.6558
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1330
98.7273
99.5420
75.3696
3281342332819151102
67.5497
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.9370
94.9441
99.0153
65.4795
882647088498883
94.3182
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4891
99.5708
99.4077
75.9619
218059421817130120
92.3077
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7710
96.8925
98.6656
61.3340
3043297630464412353
85.6796
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.3287
97.7902
98.8731
68.6335
1345330413424153111
72.5490
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1607
93.4776
99.0024
33.2299
868560687338882
93.1818
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.5930
99.2105
97.9830
63.7025
8294668307171160
93.5673
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.1512
96.0630
98.2644
67.2067
73230736138
61.5385
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.4707
97.2414
97.7011
69.7917
42312425105
50.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
88.0126
79.7101
98.2456
58.3942
55145611
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8342
98.4496
99.2218
63.6492
254425522
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9236
1001000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.8391
70700
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.8750
10100
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3197
20200
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2196
98.8975
99.5437
78.3395
152517152774
57.1429
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.1852
99.0239
99.3471
78.2176
913991363
50.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.8333
93.2432
98.5714
82.3678
6956911
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7245
99.4505
100.0000
77.8994
543354500
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4810
99.1533
99.8108
81.4724
10549105521
50.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4652
99.0868
99.8466
80.5547
651665110
0.0000