PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78401-78450 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 68.6131 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.3077 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 45.4545 | 22 | 3 | 24 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m0_e0 | * | 82.5397 | 92.8571 | 74.2857 | 96.0362 | 26 | 2 | 26 | 9 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m0_e0 | het | 85.1182 | 94.7368 | 77.2727 | 96.5300 | 18 | 1 | 17 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.7407 | 4 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.8974 | 4 | 1 | 4 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.4317 | 91.9540 | 83.3333 | 94.2618 | 80 | 7 | 80 | 16 | 4 | 25.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.9086 | 95.6522 | 79.6296 | 95.3807 | 44 | 2 | 43 | 11 | 4 | 36.3636 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.5047 | 22 | 4 | 23 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 82.3529 | 93.3333 | 73.6842 | 95.2141 | 14 | 1 | 14 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.3684 | 92.2222 | 83.0000 | 94.8823 | 83 | 7 | 83 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.3481 | 95.8333 | 78.5714 | 95.8854 | 46 | 2 | 44 | 12 | 4 | 33.3333 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.3103 | 22 | 4 | 24 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 93.7500 | 75.0000 | 95.8071 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.6847 | 91.7526 | 83.9623 | 94.6973 | 89 | 8 | 89 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1029 | 96.0784 | 79.6610 | 95.7645 | 49 | 2 | 47 | 12 | 4 | 33.3333 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.4000 | 25 | 5 | 27 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 93.7500 | 75.0000 | 95.8420 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 96.9298 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 96.7836 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6190 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.7368 | 100.0000 | 90.0000 | 96.5398 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 96.5463 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.3118 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | * | 93.1034 | 100.0000 | 87.0968 | 96.9578 | 27 | 0 | 27 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.0549 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6170 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.3333 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.5254 | 96.4286 | 87.0968 | 97.0363 | 27 | 1 | 27 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.2381 | 100.0000 | 90.9091 | 97.1317 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.6170 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.4138 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 96.9799 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 96.0177 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m1_e0 | * | 90.9091 | 100.0000 | 83.3333 | 96.8085 | 15 | 0 | 15 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.1722 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 99.1228 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e0 | * | 91.8919 | 100.0000 | 85.0000 | 97.0631 | 17 | 0 | 17 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.3928 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e1 | * | 89.4737 | 94.4444 | 85.0000 | 97.1098 | 17 | 1 | 17 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 96.4427 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |