PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77301-77350 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5905 | 99.5090 | 99.6721 | 83.7116 | 608 | 3 | 608 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | * | 98.8190 | 99.1233 | 98.5166 | 84.7206 | 1922 | 17 | 1926 | 29 | 6 | 20.6897 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.5917 | 99.2114 | 97.9798 | 84.8890 | 1258 | 10 | 1261 | 26 | 4 | 15.3846 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.9695 | 92.1569 | 97.9592 | 89.3478 | 47 | 4 | 48 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5964 | 99.5161 | 99.6769 | 83.7873 | 617 | 3 | 617 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9095 | 98.9919 | 96.8504 | 88.8865 | 491 | 5 | 492 | 16 | 3 | 18.7500 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | het | 97.4343 | 98.8406 | 96.0674 | 89.1958 | 341 | 4 | 342 | 14 | 1 | 7.1429 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.9899 | 99.3243 | 98.6577 | 87.1330 | 147 | 1 | 147 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5857 | 99.1728 | 98.0054 | 86.8862 | 1079 | 9 | 1081 | 22 | 5 | 22.7273 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | het | 98.2302 | 99.1736 | 97.3046 | 87.1892 | 720 | 6 | 722 | 20 | 3 | 15.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.2569 | 12 | 1 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.4269 | 99.4269 | 99.4269 | 85.2494 | 347 | 2 | 347 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | * | 98.6532 | 99.2126 | 98.1002 | 87.4743 | 1134 | 9 | 1136 | 22 | 5 | 22.7273 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | het | 98.3172 | 99.2147 | 97.4359 | 87.7185 | 758 | 6 | 760 | 20 | 3 | 15.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.2055 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4505 | 99.4505 | 99.4505 | 86.0108 | 362 | 2 | 362 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e1 | * | 98.6694 | 99.2221 | 98.1229 | 87.5306 | 1148 | 9 | 1150 | 22 | 5 | 22.7273 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e1 | het | 98.3302 | 99.2208 | 97.4555 | 87.7969 | 764 | 6 | 766 | 20 | 3 | 15.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.3177 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4624 | 99.4624 | 99.4624 | 86.0098 | 370 | 2 | 370 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | * | 97.7917 | 99.3080 | 96.3211 | 91.7060 | 287 | 2 | 288 | 11 | 1 | 9.0909 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0991 | 99.0099 | 95.2607 | 91.9833 | 200 | 2 | 201 | 10 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7011 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 90.2935 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 98.2056 | 99.0237 | 97.4008 | 89.1607 | 710 | 7 | 712 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | het | 97.7580 | 99.1701 | 96.3855 | 89.4826 | 478 | 4 | 480 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0297 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 87.4377 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | * | 98.3127 | 99.0826 | 97.5547 | 89.6483 | 756 | 7 | 758 | 19 | 4 | 21.0526 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | het | 97.8953 | 99.2218 | 96.6038 | 89.9048 | 510 | 4 | 512 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3799 | 6 | 1 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.3789 | 99.1736 | 99.5851 | 88.1105 | 240 | 2 | 240 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2175 | 98.9717 | 97.4747 | 89.6498 | 770 | 8 | 772 | 20 | 5 | 25.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | het | 97.8305 | 99.0421 | 96.6480 | 89.9495 | 517 | 5 | 519 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.0213 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 88.0424 | 246 | 2 | 246 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | * | 93.8776 | 100.0000 | 88.4615 | 97.3537 | 46 | 0 | 46 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.2898 | 33 | 0 | 33 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3085 | 13 | 0 | 13 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 97.4212 | 99.4152 | 95.5056 | 95.3670 | 170 | 1 | 170 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 96.5217 | 100.0000 | 93.2773 | 95.6962 | 111 | 0 | 111 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.2387 | 56 | 1 | 56 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 97.6000 | 99.4565 | 95.8115 | 95.6223 | 183 | 1 | 183 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 96.8000 | 100.0000 | 93.7984 | 95.8694 | 121 | 0 | 121 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.6895 | 59 | 1 | 59 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | * | 97.6127 | 99.4595 | 95.8333 | 95.7037 | 184 | 1 | 184 | 8 | 1 | 12.5000 | |