PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76851-76900 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | tv | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.8919 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m1_e0 | homalt | 99.2393 | 99.0654 | 99.4138 | 85.1935 | 848 | 8 | 848 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | * | 98.1510 | 98.5427 | 97.7625 | 89.3375 | 2840 | 42 | 2840 | 65 | 13 | 20.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | het | 97.6459 | 98.3505 | 96.9512 | 90.3681 | 1908 | 32 | 1908 | 60 | 9 | 15.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | homalt | 99.2513 | 99.0395 | 99.4641 | 86.2166 | 928 | 9 | 928 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | * | 98.1725 | 98.5597 | 97.7884 | 89.4056 | 2874 | 42 | 2874 | 65 | 13 | 20.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | het | 97.6756 | 98.3715 | 96.9895 | 90.4284 | 1933 | 32 | 1933 | 60 | 9 | 15.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | homalt | 99.2585 | 99.0486 | 99.4692 | 86.2982 | 937 | 9 | 937 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | tv | map_siren | * | 99.5565 | 99.7083 | 99.4051 | 58.5993 | 45796 | 134 | 45788 | 274 | 36 | 13.1387 | |
| bgallagher-sentieon | SNP | tv | map_siren | het | 99.3778 | 99.6714 | 99.0859 | 61.4179 | 28515 | 94 | 28510 | 263 | 27 | 10.2662 | |
| bgallagher-sentieon | SNP | tv | map_siren | hetalt | 98.1132 | 96.2963 | 100.0000 | 69.5312 | 78 | 3 | 78 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_siren | homalt | 99.8607 | 99.7854 | 99.9361 | 52.7521 | 17203 | 37 | 17200 | 11 | 9 | 81.8182 | |
| bgallagher-sentieon | SNP | tv | segdup | * | 99.4858 | 99.8125 | 99.1612 | 91.3387 | 8516 | 16 | 8512 | 72 | 6 | 8.3333 | |
| bgallagher-sentieon | SNP | tv | segdup | het | 99.2561 | 99.7541 | 98.7631 | 92.1695 | 5274 | 13 | 5270 | 66 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 7 | 0 | 7 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | segdup | homalt | 99.8611 | 99.9074 | 99.8149 | 89.4615 | 3235 | 3 | 3235 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.5948 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 55.5556 | 32 | 1 | 32 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | * | * | 99.2678 | 99.2143 | 99.3213 | 59.6036 | 341835 | 2707 | 341703 | 2335 | 1924 | 82.3983 | |
| bgallagher-sentieon | INDEL | * | * | het | 99.5620 | 99.6441 | 99.4801 | 60.4341 | 193442 | 691 | 193072 | 1009 | 623 | 61.7443 | |
| bgallagher-sentieon | INDEL | * | * | hetalt | 95.9976 | 92.5387 | 99.7251 | 56.9311 | 23354 | 1883 | 23582 | 65 | 64 | 98.4615 | |
| bgallagher-sentieon | INDEL | * | * | homalt | 99.4457 | 99.8937 | 99.0017 | 58.7526 | 125039 | 133 | 125049 | 1261 | 1237 | 98.0967 | |
| bgallagher-sentieon | INDEL | * | HG002complexvar | * | 99.4954 | 99.3774 | 99.6137 | 58.2041 | 76459 | 479 | 76328 | 296 | 257 | 86.8243 | |
| bgallagher-sentieon | INDEL | * | HG002complexvar | het | 99.6698 | 99.5477 | 99.7922 | 57.6447 | 46003 | 209 | 45633 | 95 | 61 | 64.2105 | |
| bgallagher-sentieon | INDEL | * | HG002complexvar | hetalt | 95.7653 | 93.2955 | 98.3694 | 67.9599 | 3451 | 248 | 3680 | 61 | 61 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | HG002complexvar | homalt | 99.7010 | 99.9186 | 99.4844 | 57.3638 | 27005 | 22 | 27015 | 140 | 135 | 96.4286 | |
| bgallagher-sentieon | INDEL | * | HG002compoundhet | * | 93.7345 | 93.5147 | 93.9554 | 62.6967 | 28017 | 1943 | 27901 | 1795 | 1783 | 99.3315 | |
| bgallagher-sentieon | INDEL | * | HG002compoundhet | het | 92.6752 | 98.3879 | 87.5896 | 79.6233 | 4028 | 66 | 3790 | 537 | 528 | 98.3240 | |
| bgallagher-sentieon | INDEL | * | HG002compoundhet | hetalt | 96.0304 | 92.5536 | 99.7785 | 50.2300 | 23305 | 1875 | 23427 | 52 | 52 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | HG002compoundhet | homalt | 53.1056 | 99.7085 | 36.1905 | 83.1205 | 684 | 2 | 684 | 1206 | 1203 | 99.7512 | |
| bgallagher-sentieon | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9337 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9414 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8252 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9295 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | func_cds | * | 99.5531 | 99.7753 | 99.3318 | 44.7724 | 444 | 1 | 446 | 3 | 1 | 33.3333 | |
| bgallagher-sentieon | INDEL | * | func_cds | het | 99.5392 | 100.0000 | 99.0826 | 49.7696 | 214 | 0 | 216 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 38.4824 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1594 | 93.5769 | 94.7492 | 68.8883 | 9426 | 647 | 9275 | 514 | 466 | 90.6615 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1274 | 96.7822 | 93.5283 | 79.2155 | 3910 | 130 | 3613 | 250 | 209 | 83.6000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8385 | 87.0031 | 99.5129 | 39.9105 | 3327 | 497 | 3473 | 17 | 16 | 94.1176 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2519 | 99.0946 | 89.8604 | 65.5446 | 2189 | 20 | 2189 | 247 | 241 | 97.5709 | |