PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76751-76800 / 86044 show all
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4652
99.1471
99.7854
85.5145
465446511
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4691
99.4211
99.5171
82.2582
4122244122207
35.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2817
99.2817
99.2817
83.4450
2626192626196
31.5789
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.8571
30300
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7995
99.6662
99.9331
79.6097
14935149311
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.1996
99.5127
98.8884
74.7272
14500711450016314
8.5890
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8517
99.4416
98.2688
76.2612
908251908216011
6.8750
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
86.8421
1501500
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7876
99.6312
99.9445
71.5069
540320540333
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7013
99.6705
99.7321
66.3966
48401648401310
76.9231
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.6764
99.7409
99.6119
68.7361
308083080129
75.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7448
99.5473
99.9432
61.1393
17598175911
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200*
98.0392
96.1538
100.0000
96.7866
2512500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200het
96.9697
94.1176
100.0000
97.2556
1611600
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.3368
90900
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9129
99.8992
99.9266
60.1913
10900111089685
62.5000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9002
99.8860
99.9144
60.6431
70118700763
50.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3344
38843388422
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.6738
99.8792
97.4971
38.9618
7443974401913
1.5707
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.9485
99.8507
96.1175
40.3651
4682746791891
0.5291
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.2312
27562275622
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.3939
4114110
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
97.2222
97.2222
97.2222
88.3117
3513510
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.1818
60600
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6672
99.8841
99.4512
37.3053
344643443192
10.5263
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.5336
99.9532
99.1175
38.8352
213712134192
10.5263
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.5500
13092130900
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2143
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvmap_l100_m0_e0*
98.9757
99.3865
98.5682
71.0162
11016681101516025
15.6250
bgallagher-sentieonSNPtvmap_l100_m0_e0het
98.6394
99.3908
97.8993
74.3366
717844717715421
13.6364
bgallagher-sentieonSNPtvmap_l100_m0_e0hetalt
96.7742
93.7500
100.0000
68.7500
1511500
bgallagher-sentieonSNPtvmap_l100_m0_e0homalt
99.6221
99.4020
99.8433
61.4866
382323382364
66.6667