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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1530 1531 1532 1533 1534 1535 1536 1537 1538 ... 1720 1721 » 76651-76700 / 86044 show all
bgallagher-sentieon	SNP	*	map_l125_m1_e0	het	98.9928	99.3695	98.6190	74.6006	28213	179	28207	395	55	13.9241
bgallagher-sentieon	SNP	*	map_l125_m1_e0	hetalt	96.5517	93.3333	100.0000	71.4286	28	2	28	0	0
bgallagher-sentieon	SNP	*	map_l125_m1_e0	homalt	99.7275	99.5741	99.8813	63.4132	16833	72	16833	20	15	75.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e0	*	99.2735	99.4499	99.0978	72.9518	46466	257	46460	423	70	16.5485
bgallagher-sentieon	SNP	*	map_l125_m2_e0	het	99.0076	99.3826	98.6355	75.8378	29137	181	29131	403	55	13.6476
bgallagher-sentieon	SNP	*	map_l125_m2_e0	hetalt	96.5517	93.3333	100.0000	76.0684	28	2	28	0	0
bgallagher-sentieon	SNP	*	map_l125_m2_e0	homalt	99.7291	99.5741	99.8845	66.0253	17301	74	17301	20	15	75.0000
bgallagher-sentieon	SNP	*	map_l125_m2_e1	*	99.2798	99.4555	99.1048	72.9953	46945	257	46939	424	70	16.5094
bgallagher-sentieon	SNP	ti	map_l250_m1_e0	hetalt	85.7143	75.0000	100.0000	86.9565	3	1	3	0	0
bgallagher-sentieon	SNP	ti	map_l250_m1_e0	homalt	99.3125	98.8799	99.7489	85.0633	1589	18	1589	4	3	75.0000
bgallagher-sentieon	SNP	ti	map_l250_m2_e0	*	98.6664	98.9816	98.3532	89.5470	4957	51	4957	83	19	22.8916
bgallagher-sentieon	SNP	ti	map_l250_m2_e0	het	98.3066	99.0166	97.6068	90.7462	3222	32	3222	79	16	20.2532
bgallagher-sentieon	SNP	ti	map_l250_m2_e0	hetalt	88.8889	80.0000	100.0000	84.6154	4	1	4	0	0
bgallagher-sentieon	SNP	ti	map_l250_m2_e0	homalt	99.3685	98.9708	99.7695	86.1400	1731	18	1731	4	3	75.0000
bgallagher-sentieon	SNP	ti	map_l250_m2_e1	*	98.6646	98.9756	98.3555	89.6132	5024	52	5024	84	19	22.6190
bgallagher-sentieon	SNP	ti	map_l250_m2_e1	het	98.2995	98.9997	97.6091	90.8150	3266	33	3266	80	16	20.0000
bgallagher-sentieon	SNP	ti	map_l250_m2_e1	hetalt	88.8889	80.0000	100.0000	84.6154	4	1	4	0	0
bgallagher-sentieon	SNP	ti	map_l250_m2_e1	homalt	99.3768	98.9842	99.7725	86.1825	1754	18	1754	4	3	75.0000
bgallagher-sentieon	SNP	ti	map_siren	*	99.6181	99.6801	99.5561	54.0168	100034	321	100019	446	66	14.7982
bgallagher-sentieon	SNP	ti	map_siren	het	99.4766	99.6377	99.3160	56.6817	62156	226	62147	428	50	11.6822
bgallagher-sentieon	SNP	ti	map_siren	hetalt	98.2143	96.4912	100.0000	68.3908	55	2	55	0	0
bgallagher-sentieon	SNP	ti	map_siren	homalt	99.8535	99.7547	99.9524	48.7705	37823	93	37817	18	16	88.8889
bgallagher-sentieon	SNP	ti	segdup	*	99.5103	99.8567	99.1663	89.5899	19509	28	19507	164	6	3.6585
bgallagher-sentieon	SNP	ti	segdup	het	99.2686	99.8587	98.6854	90.5804	12013	17	12011	160	2	1.2500
bgallagher-sentieon	SNP	ti	segdup	hetalt	100.0000	100.0000	100.0000	98.5185	2	0	2	0	0
bgallagher-sentieon	SNP	ti	segdup	homalt	99.9000	99.8534	99.9467	87.4231	7494	11	7494	4	4	100.0000
bgallagher-sentieon	SNP	ti	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	tech_badpromoters	*	98.2249	97.6471	98.8095	45.0980	83	2	83	1	1	100.0000
bgallagher-sentieon	SNP	ti	tech_badpromoters	het	97.6744	95.4545	100.0000	48.1481	42	2	42	0	0
bgallagher-sentieon	SNP	ti	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	41.6667	41	0	41	1	1	100.0000
bgallagher-sentieon	SNP	tv	*	*	99.8908	99.9655	99.8163	21.9055	969355	335	969269	1784	78	4.3722
bgallagher-sentieon	SNP	tv	*	het	99.8318	99.9594	99.7045	23.0898	591456	240	591385	1753	53	3.0234
bgallagher-sentieon	SNP	tv	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
bgallagher-sentieon	SNP	tv	*	homalt	99.9838	99.9759	99.9918	19.9074	377032	91	377017	31	25	80.6452
bgallagher-sentieon	SNP	tv	HG002complexvar	*	99.9492	99.9313	99.9671	22.0213	245983	169	245892	81	31	38.2716
bgallagher-sentieon	SNP	tv	HG002complexvar	het	99.9389	99.9237	99.9542	21.4883	150616	115	150540	69	21	30.4348
bgallagher-sentieon	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	35.9667	308	2	308	0	0
bgallagher-sentieon	SNP	tv	HG002complexvar	homalt	99.9663	99.9453	99.9874	22.7972	95059	52	95044	12	10	83.3333
bgallagher-sentieon	SNP	tv	HG002compoundhet	*	99.7142	99.7422	99.6862	48.7920	8900	23	8895	28	11	39.2857
bgallagher-sentieon	SNP	tv	HG002compoundhet	het	99.6043	99.6576	99.5511	55.0192	4657	16	4657	21	5	23.8095
bgallagher-sentieon	SNP	tv	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	22.4231	858	4	858	0	0
bgallagher-sentieon	SNP	tv	HG002compoundhet	homalt	99.8524	99.9115	99.7933	42.7775	3385	3	3380	7	6	85.7143
bgallagher-sentieon	SNP	tv	decoy	*		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	decoy	het		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	tv	decoy	homalt		0.0000		100.0000	0	0	0	0	0

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