PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76501-76550 / 86044 show all
bgallagher-sentieonINDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
98.0392
21200
bgallagher-sentieonINDELI6_15map_siren*
96.6887
95.7377
97.6589
84.7837
2921329275
71.4286
bgallagher-sentieonINDELI6_15map_sirenhet
96.7972
95.1049
98.5507
86.5103
136713621
50.0000
bgallagher-sentieonINDELI6_15map_sirenhetalt
96.4029
93.0556
100.0000
78.1046
6756700
bgallagher-sentieonINDELI6_15map_sirenhomalt
96.7391
98.8889
94.6809
85.2201
8918954
80.0000
bgallagher-sentieonINDELI6_15segdup*
98.8506
98.2857
99.4220
92.6819
172317210
0.0000
bgallagher-sentieonINDELI6_15segduphet
98.1818
97.5904
98.7805
93.7690
8128110
0.0000
bgallagher-sentieonINDELI6_15segduphetalt
98.8764
97.7778
100.0000
89.2421
4414400
bgallagher-sentieonINDELI6_15segduphomalt
100.0000
100.0000
100.0000
92.6448
4704700
bgallagher-sentieonINDELI6_15segdupwithalt*
0.0000
100.0000
00000
bgallagher-sentieonINDELI6_15segdupwithalthet
0.0000
100.0000
00000
bgallagher-sentieonINDELI6_15segdupwithalthetalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI6_15segdupwithalthomalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
56.6667
1301300
bgallagher-sentieonINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
56.2500
70700
bgallagher-sentieonINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
bgallagher-sentieonINDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
62.5000
30300
bgallagher-sentieonSNP***
99.9296
99.9673
99.8919
18.9151
305362099930534713303195
5.9037
bgallagher-sentieonSNP**het
99.8943
99.9607
99.8280
19.9469
187285173618727263227129
3.9975
bgallagher-sentieonSNP**hetalt
99.7699
99.5408
100.0000
40.6164
867486700
bgallagher-sentieonSNP**homalt
99.9858
99.9781
99.9936
17.1960
117990225911798787666
86.8421
bgallagher-sentieonSNP*HG002complexvar*
99.9538
99.9332
99.9744
19.0217
75387750475372219384
43.5233
bgallagher-sentieonSNP*HG002complexvarhet
99.9449
99.9235
99.9662
18.4844
46514135646501115750
31.8471
bgallagher-sentieonSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
bgallagher-sentieonSNP*HG002complexvarhomalt
99.9685
99.9494
99.9875
19.8511
2884281462884033634
94.4444
bgallagher-sentieonSNP*HG002compoundhet*
99.8063
99.8025
99.8102
41.0420
2577151257644925
51.0204
bgallagher-sentieonSNP*HG002compoundhethet
99.7460
99.7320
99.7601
45.7386
1414038141383411
32.3529
bgallagher-sentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
bgallagher-sentieonSNP*HG002compoundhethomalt
99.8887
99.9165
99.8609
34.8774
107739107681514
93.3333
bgallagher-sentieonSNP*decoy*
0.0000
100.0000
00000
bgallagher-sentieonSNP*decoyhet
0.0000
100.0000
00000
bgallagher-sentieonSNP*decoyhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*decoyhomalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*func_cds*
99.8899
99.9669
99.8129
24.1761
18144618141340
0.0000
bgallagher-sentieonSNP*func_cdshet
99.8344
99.9731
99.6961
26.0085
11158311155340
0.0000
bgallagher-sentieonSNP*func_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
bgallagher-sentieonSNP*func_cdshomalt
99.9785
99.9570
100.0000
20.9518
69763697600
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2848
99.0764
99.4941
66.4545
4720444720245
20.8333
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.0536
98.9058
99.2019
69.0574
2983332983245
20.8333
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6844
99.3707
100.0000
60.6925
173711173700
bgallagher-sentieonSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6082
99.8778
99.3401
60.0690
55563685555236930
8.1301
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4306
99.8701
98.9950
61.8984
35373463536235920
5.5710
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
82.3529
1211200
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9232
99.8960
99.9505
56.3257
2017821201781010
100.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.2960
99.5274
99.0657
69.8134
454862164548642930
6.9930