PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76301-76350 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.8503 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 96.0000 | 95.5752 | 96.4286 | 96.3170 | 108 | 5 | 108 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | het | 94.5736 | 92.4242 | 96.8254 | 96.9163 | 61 | 5 | 61 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1308 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.7250 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0352 | 95.6140 | 96.4602 | 96.4001 | 109 | 5 | 109 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | het | 94.5736 | 92.4242 | 96.8254 | 97.0199 | 61 | 5 | 61 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1651 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.7598 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | * | 99.3016 | 99.2346 | 99.3688 | 80.4976 | 2982 | 23 | 2991 | 19 | 5 | 26.3158 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | het | 99.0779 | 98.9292 | 99.2271 | 81.4696 | 1663 | 18 | 1669 | 13 | 1 | 7.6923 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 86.1499 | 109 | 3 | 109 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_siren | homalt | 99.6711 | 99.8350 | 99.5078 | 78.1149 | 1210 | 2 | 1213 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | segdup | * | 99.2928 | 99.3390 | 99.2467 | 94.4424 | 1052 | 7 | 1054 | 8 | 2 | 25.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | segdup | het | 99.1669 | 99.4424 | 98.8930 | 95.2746 | 535 | 3 | 536 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 95.6881 | 46 | 2 | 47 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.7775 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | * | * | 97.2604 | 96.4589 | 98.0753 | 52.5522 | 23944 | 879 | 23949 | 470 | 434 | 92.3404 | |
| bgallagher-sentieon | INDEL | I6_15 | * | het | 98.9304 | 98.7940 | 99.0672 | 58.9052 | 9912 | 121 | 9877 | 93 | 60 | 64.5161 | |
| bgallagher-sentieon | INDEL | I6_15 | * | hetalt | 95.3960 | 91.2291 | 99.9618 | 38.0362 | 7801 | 750 | 7841 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | * | homalt | 97.0258 | 99.8718 | 94.3376 | 54.5892 | 6231 | 8 | 6231 | 374 | 371 | 99.1979 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002complexvar | * | 98.3311 | 97.7254 | 98.9445 | 57.6259 | 4683 | 109 | 4687 | 50 | 49 | 98.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002complexvar | het | 99.2727 | 98.8535 | 99.6955 | 59.4318 | 2328 | 27 | 2292 | 7 | 6 | 85.7143 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002complexvar | hetalt | 96.5751 | 93.3769 | 100.0000 | 55.8131 | 1142 | 81 | 1182 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | HG002complexvar | homalt | 98.2186 | 99.9176 | 96.5764 | 55.7279 | 1213 | 1 | 1213 | 43 | 43 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002compoundhet | * | 93.1478 | 91.3856 | 94.9793 | 37.0668 | 8020 | 756 | 8021 | 424 | 422 | 99.5283 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002compoundhet | het | 84.2722 | 97.1154 | 74.4292 | 84.1189 | 202 | 6 | 163 | 56 | 55 | 98.2143 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002compoundhet | hetalt | 95.3997 | 91.2147 | 99.9872 | 29.5092 | 7787 | 750 | 7827 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002compoundhet | homalt | 14.4522 | 100.0000 | 7.7889 | 57.4332 | 31 | 0 | 31 | 367 | 366 | 99.7275 | |
| bgallagher-sentieon | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 38.5714 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 24 | 0 | 24 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7733 | 90.0718 | 97.7922 | 67.5516 | 753 | 83 | 753 | 17 | 15 | 88.2353 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6396 | 95.5466 | 97.7578 | 80.8255 | 236 | 11 | 218 | 5 | 3 | 60.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.6223 | 86.4151 | 99.7904 | 48.0392 | 458 | 72 | 476 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.4729 | 100.0000 | 84.2857 | 76.0274 | 59 | 0 | 59 | 11 | 11 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||