PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76201-76250 / 86044 show all
bgallagher-sentieonSNPtimap_l125_m2_e1het
99.0933
99.3608
98.8273
75.6520
189651221896122533
14.6667
bgallagher-sentieonSNPtimap_l125_m2_e1hetalt
97.8723
95.8333
100.0000
70.5128
2312300
bgallagher-sentieonSNPtimap_l125_m2_e1homalt
99.7377
99.5724
99.9037
65.6841
114094911409119
81.8182
bgallagher-sentieonSNPtimap_l150_m0_e0*
98.8263
99.0968
98.5573
80.5178
779071778811420
17.5439
bgallagher-sentieonSNPtimap_l150_m0_e0het
98.4386
98.9798
97.9033
83.1082
504552504310815
13.8889
bgallagher-sentieonSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
84.2105
30300
bgallagher-sentieonSNPtimap_l150_m0_e0homalt
99.5462
99.3118
99.7817
72.6486
274219274265
83.3333
bgallagher-sentieonSNPtimap_l150_m1_e0*
99.1792
99.3202
99.0387
75.5864
195781341957419036
18.9474
bgallagher-sentieonSNPtimap_l150_m1_e0het
98.8799
99.2158
98.5462
78.5485
12273971226918129
16.0221
bgallagher-sentieonSNPtimap_l150_m1_e0hetalt
96.5517
93.3333
100.0000
70.8333
1411400
bgallagher-sentieonSNPtimap_l150_m1_e0homalt
99.6923
99.5087
99.8767
68.0791
729136729197
77.7778
bgallagher-sentieonSNPtimap_l150_m2_e0*
99.1869
99.3321
99.0422
77.0287
203751372037119737
18.7817
bgallagher-sentieonSNPtimap_l150_m2_e0het
98.8935
99.2392
98.5502
79.6724
12783981277918830
15.9574
bgallagher-sentieonSNPtimap_l150_m2_e0hetalt
96.5517
93.3333
100.0000
75.0000
1411400
bgallagher-sentieonSNPtimap_l150_m2_e0homalt
99.6909
99.5011
99.8814
70.4694
757838757897
77.7778
bgallagher-sentieonSNPtimap_l150_m2_e1*
99.1904
99.3389
99.0424
77.0978
205861372058219937
18.5930
bgallagher-sentieonSNPtimap_l150_m2_e1het
98.8973
99.2470
98.5500
79.7478
12917981291319030
15.7895
bgallagher-sentieonSNPtimap_l150_m2_e1hetalt
96.5517
93.3333
100.0000
75.0000
1411400
bgallagher-sentieonSNPtimap_l150_m2_e1homalt
99.6940
99.5060
99.8826
70.5038
765538765597
77.7778
bgallagher-sentieonSNPtimap_l250_m0_e0*
98.1132
98.6861
97.5469
93.1376
1352181352347
20.5882
bgallagher-sentieonSNPtimap_l250_m0_e0het
97.6670
98.6081
96.7437
93.8565
92113921315
16.1290
bgallagher-sentieonSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtimap_l250_m0_e0homalt
99.0805
98.8532
99.3088
90.7522
431543132
66.6667
bgallagher-sentieonSNPtimap_l250_m1_e0*
98.5526
98.8862
98.2213
89.0457
45285145288219
23.1707
bgallagher-sentieonSNPtimap_l250_m1_e0het
98.1612
98.9218
97.4121
90.4001
29363229367816
20.5128
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.0886
98.9484
99.2292
67.4228
38584138623018
60.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.2083
99.4128
99.0047
74.3003
1693101691175
29.4118
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.6559
97.3475
100.0000
41.6139
110130110700
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.3464
99.9061
98.7929
68.3700
1064110641313
100.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
96.7495
94.0520
99.6063
76.6972
2531625310
0.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200het
93.5774
90.1961
97.2222
94.2215
4653510
0.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.3995
94.9309
100.0000
38.5269
2061121700
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
99.1228
10100
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
99.5235
99.4286
99.6187
61.7293
10446104544
100.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
99.5738
99.3617
99.7868
68.2894
467346811
100.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5185
99.0415
100.0000
33.4764
310331000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4413
100.0000
98.8889
66.0804
267026733
100.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_51to200*
93.8776
92.0000
95.8333
61.9048
2322310
0.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
80.0000
100.0000
66.6667
91.1765
20210
0.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
95.4545
91.3043
100.0000
12.5000
2122100
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI1_5map_l100_m0_e0*
98.5355
98.8950
98.1785
84.8343
5376539103
30.0000
bgallagher-sentieonINDELI1_5map_l100_m0_e0het
98.1651
98.1595
98.1707
86.4351
320632260
0.0000
bgallagher-sentieonINDELI1_5map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
93.1298
90900
bgallagher-sentieonINDELI1_5map_l100_m0_e0homalt
99.0476
100.0000
98.1132
80.2054
208020843
75.0000
bgallagher-sentieonINDELI1_5map_l100_m1_e0*
98.9183
98.8798
98.9568
83.1237
1324151328144
28.5714