PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76151-76200 / 86044 show all
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.4573
99.8975
99.0210
40.1856
1072111107211061
0.9434
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.1461
99.8517
98.4503
43.0996
67341067341061
0.9434
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
83.3333
10100
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
99.9749
100.0000
34.3760
39861398600
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200*
93.8776
91.0891
96.8421
93.5065
9299233
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200het
94.6565
93.9394
95.3846
93.7440
6246233
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
85.7143
100.0000
92.9245
3053000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.9232
99.7699
29.4425
39033390291
11.1111
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7984
99.9193
99.6778
30.7392
24762247580
0.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
26.9939
14270142711
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.3262
80800
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.5000
60600
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.7213
20200
bgallagher-sentieonSNPtimap_l100_m0_e0*
99.2132
99.3340
99.0926
69.0197
216261452162319835
17.6768
bgallagher-sentieonSNPtimap_l100_m0_e0het
98.9661
99.2777
98.6565
72.6282
138821011387918928
14.8148
bgallagher-sentieonSNPtimap_l100_m0_e0hetalt
96.2963
92.8571
100.0000
65.7895
1311300
bgallagher-sentieonSNPtimap_l100_m0_e0homalt
99.6648
99.4469
99.8837
59.2653
773143773197
77.7778
bgallagher-sentieonSNPtimap_l100_m1_e0*
99.4715
99.5452
99.3979
64.6493
477132184770628950
17.3010
bgallagher-sentieonSNPtimap_l100_m1_e0het
99.2799
99.4757
99.0849
68.0556
297851572977827538
13.8182
bgallagher-sentieonSNPtimap_l100_m1_e0hetalt
98.2456
96.5517
100.0000
68.8889
2812800
bgallagher-sentieonSNPtimap_l100_m1_e0homalt
99.7937
99.6659
99.9218
56.9365
1790060179001412
85.7143
bgallagher-sentieonSNPtimap_l100_m2_e0*
99.4612
99.5466
99.3760
66.3096
487392224873230650
16.3399
bgallagher-sentieonSNPtimap_l100_m2_e0het
99.2634
99.4775
99.0503
69.3746
304621603045529238
13.0137
bgallagher-sentieonSNPtimap_l100_m2_e0hetalt
98.3051
96.6667
100.0000
70.4082
2912900
bgallagher-sentieonSNPtimap_l100_m2_e0homalt
99.7949
99.6668
99.9233
59.4718
1824861182481412
85.7143
bgallagher-sentieonSNPtimap_l100_m2_e1*
99.4649
99.5494
99.3806
66.3075
492622234925530750
16.2866
bgallagher-sentieonSNPtimap_l100_m2_e1het
99.2699
99.4832
99.0575
69.3770
308001603079329338
12.9693
bgallagher-sentieonSNPtimap_l100_m2_e1hetalt
98.3607
96.7742
100.0000
69.6970
3013000
bgallagher-sentieonSNPtimap_l100_m2_e1homalt
99.7943
99.6648
99.9241
59.4504
1843262184321412
85.7143
bgallagher-sentieonSNPtimap_l125_m0_e0*
98.9758
99.2086
98.7441
75.3623
126611011265916131
19.2547
bgallagher-sentieonSNPtimap_l125_m0_e0het
98.6693
99.1771
98.1668
78.4213
819568819315325
16.3399
bgallagher-sentieonSNPtimap_l125_m0_e0hetalt
93.3333
87.5000
100.0000
73.0769
71700
bgallagher-sentieonSNPtimap_l125_m0_e0homalt
99.5535
99.2875
99.8209
66.4916
445932445986
75.0000
bgallagher-sentieonSNPtimap_l125_m1_e0*
99.3257
99.4273
99.2243
71.0550
291671682916322842
18.4211
bgallagher-sentieonSNPtimap_l125_m1_e0het
99.0798
99.3430
98.8180
74.4018
181461201814221733
15.2074
bgallagher-sentieonSNPtimap_l125_m1_e0hetalt
97.8723
95.8333
100.0000
64.0625
2312300
bgallagher-sentieonSNPtimap_l125_m1_e0homalt
99.7370
99.5745
99.9001
63.0037
109984710998119
81.8182
bgallagher-sentieonSNPtimap_l125_m2_e0*
99.3281
99.4316
99.2249
72.6504
300861723008223542
17.8723
bgallagher-sentieonSNPtimap_l125_m2_e0het
99.0858
99.3537
98.8194
75.6140
187541221875022433
14.7321
bgallagher-sentieonSNPtimap_l125_m2_e0hetalt
97.8723
95.8333
100.0000
70.5128
2312300
bgallagher-sentieonSNPtimap_l125_m2_e0homalt
99.7354
99.5686
99.9028
65.6605
113094911309119
81.8182
bgallagher-sentieonSNPtimap_l125_m2_e1*
99.3333
99.4373
99.2295
72.6907
303971723039323642
17.7966