PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1520 1521 1522 1523 1524 1525 1526 1527 1528 ... 1720 1721 » 76151-76200 / 86044 show all
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4573	99.8975	99.0210	40.1856	10721	11	10721	106	1	0.9434
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1461	99.8517	98.4503	43.0996	6734	10	6734	106	1	0.9434
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	83.3333	1	0	1	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9875	99.9749	100.0000	34.3760	3986	1	3986	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	93.8776	91.0891	96.8421	93.5065	92	9	92	3	3	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	het	94.6565	93.9394	95.3846	93.7440	62	4	62	3	3	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	92.3077	85.7143	100.0000	92.9245	30	5	30	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000		100.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8465	99.9232	99.7699	29.4425	3903	3	3902	9	1	11.1111
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7984	99.9193	99.6778	30.7392	2476	2	2475	8	0	0.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000		100.0000	0	1	0	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	26.9939	1427	0	1427	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	94.3262	8	0	8	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	het	100.0000	100.0000	100.0000	92.5000	6	0	6	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	96.7213	2	0	2	0	0
bgallagher-sentieon	SNP	ti	map_l100_m0_e0	*	99.2132	99.3340	99.0926	69.0197	21626	145	21623	198	35	17.6768
bgallagher-sentieon	SNP	ti	map_l100_m0_e0	het	98.9661	99.2777	98.6565	72.6282	13882	101	13879	189	28	14.8148
bgallagher-sentieon	SNP	ti	map_l100_m0_e0	hetalt	96.2963	92.8571	100.0000	65.7895	13	1	13	0	0
bgallagher-sentieon	SNP	ti	map_l100_m0_e0	homalt	99.6648	99.4469	99.8837	59.2653	7731	43	7731	9	7	77.7778
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	*	99.4715	99.5452	99.3979	64.6493	47713	218	47706	289	50	17.3010
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	het	99.2799	99.4757	99.0849	68.0556	29785	157	29778	275	38	13.8182
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	hetalt	98.2456	96.5517	100.0000	68.8889	28	1	28	0	0
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	homalt	99.7937	99.6659	99.9218	56.9365	17900	60	17900	14	12	85.7143
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	*	99.4612	99.5466	99.3760	66.3096	48739	222	48732	306	50	16.3399
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	het	99.2634	99.4775	99.0503	69.3746	30462	160	30455	292	38	13.0137
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	hetalt	98.3051	96.6667	100.0000	70.4082	29	1	29	0	0
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6668	99.9233	59.4718	18248	61	18248	14	12	85.7143
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	*	99.4649	99.5494	99.3806	66.3075	49262	223	49255	307	50	16.2866
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	het	99.2699	99.4832	99.0575	69.3770	30800	160	30793	293	38	12.9693
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	hetalt	98.3607	96.7742	100.0000	69.6970	30	1	30	0	0
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	homalt	99.7943	99.6648	99.9241	59.4504	18432	62	18432	14	12	85.7143
bgallagher-sentieon	SNP	ti	map_l125_m0_e0	*	98.9758	99.2086	98.7441	75.3623	12661	101	12659	161	31	19.2547
bgallagher-sentieon	SNP	ti	map_l125_m0_e0	het	98.6693	99.1771	98.1668	78.4213	8195	68	8193	153	25	16.3399
bgallagher-sentieon	SNP	ti	map_l125_m0_e0	hetalt	93.3333	87.5000	100.0000	73.0769	7	1	7	0	0
bgallagher-sentieon	SNP	ti	map_l125_m0_e0	homalt	99.5535	99.2875	99.8209	66.4916	4459	32	4459	8	6	75.0000
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	*	99.3257	99.4273	99.2243	71.0550	29167	168	29163	228	42	18.4211
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	het	99.0798	99.3430	98.8180	74.4018	18146	120	18142	217	33	15.2074
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	hetalt	97.8723	95.8333	100.0000	64.0625	23	1	23	0	0
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	homalt	99.7370	99.5745	99.9001	63.0037	10998	47	10998	11	9	81.8182
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	*	99.3281	99.4316	99.2249	72.6504	30086	172	30082	235	42	17.8723
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	het	99.0858	99.3537	98.8194	75.6140	18754	122	18750	224	33	14.7321
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	hetalt	97.8723	95.8333	100.0000	70.5128	23	1	23	0	0
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	homalt	99.7354	99.5686	99.9028	65.6605	11309	49	11309	11	9	81.8182
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	*	99.3333	99.4373	99.2295	72.6907	30397	172	30393	236	42	17.7966

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge