PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76051-76100 / 86044 show all
bgallagher-sentieonSNP*segduphomalt
99.8883
99.8697
99.9069
88.1168
1072914107291010
100.0000
bgallagher-sentieonSNP*segdupwithalt*
0.0000
100.0000
00000
bgallagher-sentieonSNP*segdupwithalthet
0.0000
100.0000
00000
bgallagher-sentieonSNP*segdupwithalthetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*segdupwithalthomalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*tech_badpromoters*
98.0769
97.4522
98.7097
49.3464
153415322
100.0000
bgallagher-sentieonSNP*tech_badpromotershet
98.0132
96.1039
100.0000
51.6340
7437400
bgallagher-sentieonSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.0588
7917922
100.0000
bgallagher-sentieonSNPti**
99.9476
99.9680
99.9272
17.4519
208484466720847811519117
7.7024
bgallagher-sentieonSNPti*het
99.9232
99.9613
99.8851
18.4052
12813954961281341147476
5.1560
bgallagher-sentieonSNPti*hetalt
99.7416
99.4845
100.0000
40.0000
579357900
bgallagher-sentieonSNPti*homalt
99.9867
99.9791
99.9944
15.8584
8028701688028614541
91.1111
bgallagher-sentieonSNPtiHG002complexvar*
99.9558
99.9337
99.9780
17.4939
50809933750803511253
47.3214
bgallagher-sentieonSNPtiHG002complexvarhet
99.9477
99.9234
99.9720
16.9632
3145252413144718829
32.9545
bgallagher-sentieonSNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
35.3312
205220500
bgallagher-sentieonSNPtiHG002complexvarhomalt
99.9695
99.9514
99.9876
18.3190
193369941933592424
100.0000
bgallagher-sentieonSNPtiHG002compoundhet*
99.8512
99.8226
99.8798
35.5355
1744731174452114
66.6667
bgallagher-sentieonSNPtiHG002compoundhethet
99.8158
99.7685
99.8631
39.5979
9483229481136
46.1538
bgallagher-sentieonSNPtiHG002compoundhethetalt
99.7403
99.4819
100.0000
21.8453
576357600
bgallagher-sentieonSNPtiHG002compoundhethomalt
99.9053
99.9189
99.8918
30.4822
73886738888
100.0000
bgallagher-sentieonSNPtidecoy*
0.0000
100.0000
00000
bgallagher-sentieonSNPtidecoyhet
0.0000
100.0000
00000
bgallagher-sentieonSNPtidecoyhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtidecoyhomalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtifunc_cds*
99.9094
99.9565
99.8623
22.5049
13781613779190
0.0000
bgallagher-sentieonSNPtifunc_cdshet
99.8707
99.9647
99.7769
24.1158
850138499190
0.0000
bgallagher-sentieonSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
46.6667
80800
bgallagher-sentieonSNPtifunc_cdshomalt
99.9716
99.9431
100.0000
19.6954
52723527200
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2753
99.1071
99.4439
65.2571
3219293219184
22.2222
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.0857
99.0613
99.1102
68.1518
2005192005184
22.2222
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.5898
99.1830
100.0000
59.0142
121410121400
bgallagher-sentieonSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7144
99.8963
99.5331
54.5778
27930292792913110
7.6336
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5866
99.8768
99.2982
57.0448
1782922178281265
3.9683
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
87.8049
51500
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9456
99.9406
99.9505
49.3379
1009661009655
100.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.3414
99.5344
99.1492
66.7959
309981453099826616
6.0150
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0767
99.4790
98.6777
68.4621
194771021947726112
4.5977
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
83.3333
1201200
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7919
99.6278
99.9566
63.4476
11509431150954
80.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4759
99.4255
99.5264
47.7277
2942172942140
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2629
99.2900
99.2358
50.5266
1818131818140
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8224
99.6454
100.0000
42.4180
11244112400
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000