PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76001-76050 / 86044 show all
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
0.0000
0.0000
95.2381
96.4103
002010
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
94.8187
001000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
0.0000
0.0000
95.4545
96.6565
002110
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
0.0000
0.0000
93.7500
96.7480
001510
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
96.3855
00600
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
0.0000
0.0000
56.2500
94.0520
00972
28.5714
bgallagher-sentieonSNP*map_l125_m2_e1het
99.0167
99.3893
98.6469
75.8815
294591812945340455
13.6139
bgallagher-sentieonSNP*map_l125_m2_e1hetalt
96.5517
93.3333
100.0000
76.0684
2822800
bgallagher-sentieonSNP*map_l125_m2_e1homalt
99.7315
99.5779
99.8856
66.0476
1745874174582015
75.0000
bgallagher-sentieonSNP*map_l150_m0_e0*
98.7085
99.1107
98.3096
80.7877
119251071192220530
14.6341
bgallagher-sentieonSNP*map_l150_m0_e0het
98.2803
98.9924
97.5782
83.1442
786080785719522
11.2821
bgallagher-sentieonSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
88.8889
30300
bgallagher-sentieonSNP*map_l150_m0_e0homalt
99.5466
99.3397
99.7544
73.4273
4062274062108
80.0000
bgallagher-sentieonSNP*map_l150_m1_e0*
99.1019
99.3303
98.8746
75.7599
304042053039834661
17.6301
bgallagher-sentieonSNP*map_l150_m1_e0het
98.7760
99.2493
98.3073
78.6499
191711451916533049
14.8485
bgallagher-sentieonSNP*map_l150_m1_e0hetalt
94.7368
90.0000
100.0000
76.3158
1821800
bgallagher-sentieonSNP*map_l150_m1_e0homalt
99.6712
99.4855
99.8575
68.3134
1121558112151612
75.0000
bgallagher-sentieonSNP*map_l150_m2_e0*
99.1151
99.3470
98.8842
77.1865
316442083163835762
17.3669
bgallagher-sentieonSNP*map_l150_m2_e0het
98.7961
99.2748
98.3220
79.7541
199871461998134150
14.6628
bgallagher-sentieonSNP*map_l150_m2_e0hetalt
94.7368
90.0000
100.0000
80.0000
1821800
bgallagher-sentieonSNP*map_l150_m2_e0homalt
99.6746
99.4871
99.8627
70.7014
1163960116391612
75.0000
bgallagher-sentieonSNP*map_l150_m2_e1*
99.1218
99.3542
98.8904
77.2353
320022083199635962
17.2702
bgallagher-sentieonSNP*map_l150_m2_e1het
98.8048
99.2830
98.3312
79.8100
202171462021134350
14.5773
bgallagher-sentieonSNP*map_l150_m2_e1hetalt
94.7368
90.0000
100.0000
80.0000
1821800
bgallagher-sentieonSNP*map_l150_m2_e1homalt
99.6781
99.4927
99.8642
70.7146
1176760117671612
75.0000
bgallagher-sentieonSNP*map_l250_m0_e0*
97.7220
98.4543
97.0005
93.1217
21023321026512
18.4615
bgallagher-sentieonSNP*map_l250_m0_e0het
97.2742
98.3400
96.2313
93.6672
1481251481587
12.0690
bgallagher-sentieonSNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNP*map_l250_m0_e0homalt
98.8067
98.7281
98.8854
91.2693
621862175
71.4286
bgallagher-sentieonSNP*map_l250_m1_e0*
98.3858
98.7400
98.0341
88.9251
713191713114331
21.6783
bgallagher-sentieonSNP*map_l250_m1_e0het
97.9332
98.6540
97.2228
90.1965
469164469113424
17.9104
bgallagher-sentieonSNP*map_l250_m1_e0hetalt
85.7143
75.0000
100.0000
91.8919
31300
bgallagher-sentieonSNP*map_l250_m1_e0homalt
99.2870
98.9444
99.6321
85.1090
243726243797
77.7778
bgallagher-sentieonSNP*map_l250_m2_e0*
98.4835
98.8332
98.1363
89.4731
779392779314832
21.6216
bgallagher-sentieonSNP*map_l250_m2_e0het
98.0598
98.7678
97.3619
90.6085
513064513013925
17.9856
bgallagher-sentieonSNP*map_l250_m2_e0hetalt
88.8889
80.0000
100.0000
90.9091
41400
bgallagher-sentieonSNP*map_l250_m2_e0homalt
99.3276
98.9948
99.6627
86.1668
265927265997
77.7778
bgallagher-sentieonSNP*map_l250_m2_e1*
98.4903
98.8356
98.1475
89.5400
789493789414932
21.4765
bgallagher-sentieonSNP*map_l250_m2_e1het
98.0666
98.7652
97.3778
90.6744
519965519914025
17.8571
bgallagher-sentieonSNP*map_l250_m2_e1hetalt
88.8889
80.0000
100.0000
90.9091
41400
bgallagher-sentieonSNP*map_l250_m2_e1homalt
99.3355
99.0066
99.6667
86.2231
269127269197
77.7778
bgallagher-sentieonSNP*map_siren*
99.5992
99.6902
99.5084
55.5562
145775453145752720102
14.1667
bgallagher-sentieonSNP*map_sirenhet
99.4455
99.6483
99.2436
58.2943
906713209065769177
11.1433
bgallagher-sentieonSNP*map_sirenhetalt
98.1132
96.2963
100.0000
69.5312
7837800
bgallagher-sentieonSNP*map_sirenhomalt
99.8557
99.7643
99.9473
50.0857
55026130550172925
86.2069
bgallagher-sentieonSNP*segdup*
99.5028
99.8432
99.1647
90.1877
28023442801723612
5.0848
bgallagher-sentieonSNP*segduphet
99.2648
99.8268
98.7091
91.1291
1728730172812262
0.8850
bgallagher-sentieonSNP*segduphetalt
100.0000
100.0000
100.0000
96.6667
70700