PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75701-75750 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | * | map_l125_m0_e0 | het | 93.7970 | 95.7411 | 91.9304 | 89.7169 | 562 | 25 | 581 | 51 | 8 | 15.6863 | |
| cchapple-custom | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 10 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m0_e0 | homalt | 97.5089 | 96.4789 | 98.5612 | 87.0215 | 274 | 10 | 274 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | * | 95.7860 | 96.5828 | 95.0023 | 86.4180 | 2035 | 72 | 2072 | 109 | 23 | 21.1009 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | het | 94.5817 | 96.3296 | 92.8962 | 87.3662 | 1286 | 49 | 1360 | 104 | 19 | 18.2692 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 95.0000 | 0.0000 | 0.0000 | 38 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m1_e0 | homalt | 98.2049 | 97.1311 | 99.3026 | 83.9597 | 711 | 21 | 712 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | * | 95.8417 | 96.5847 | 95.1101 | 87.3742 | 2121 | 75 | 2159 | 111 | 23 | 20.7207 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | het | 94.6558 | 96.3336 | 93.0355 | 88.2941 | 1340 | 51 | 1416 | 106 | 19 | 17.9245 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 92.8571 | 0.0000 | 0.0000 | 39 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m2_e0 | homalt | 98.2786 | 97.2477 | 99.3316 | 84.9709 | 742 | 21 | 743 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | * | 95.8508 | 96.5843 | 95.1283 | 87.4762 | 2149 | 76 | 2187 | 112 | 24 | 21.4286 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | het | 94.7170 | 96.3778 | 93.1124 | 88.4024 | 1357 | 51 | 1433 | 106 | 19 | 17.9245 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 90.6977 | 0.0000 | 0.0000 | 39 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m2_e1 | homalt | 98.2393 | 97.2868 | 99.2105 | 85.0600 | 753 | 21 | 754 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | * | 94.1997 | 95.5253 | 92.9104 | 91.8068 | 491 | 23 | 498 | 38 | 8 | 21.0526 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | het | 93.0816 | 95.6012 | 90.6915 | 92.2394 | 326 | 15 | 341 | 35 | 5 | 14.2857 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m0_e0 | homalt | 96.9136 | 95.7317 | 98.1250 | 90.5716 | 157 | 7 | 157 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | * | 95.3104 | 96.2631 | 94.3764 | 89.0069 | 1288 | 50 | 1309 | 78 | 15 | 19.2308 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | het | 93.9997 | 95.9064 | 92.1674 | 89.8264 | 820 | 35 | 859 | 73 | 11 | 15.0685 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 95.2381 | 0.0000 | 0.0000 | 20 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m1_e0 | homalt | 97.9259 | 96.9697 | 98.9011 | 86.8345 | 448 | 14 | 450 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | * | map_l150_m2_e0 | * | 95.3298 | 96.2358 | 94.4406 | 89.8140 | 1355 | 53 | 1376 | 81 | 16 | 19.7531 | |
| cchapple-custom | INDEL | * | map_l150_m2_e0 | het | 94.0611 | 95.9161 | 92.2764 | 90.5184 | 869 | 37 | 908 | 76 | 12 | 15.7895 | |
| cchapple-custom | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 95.2381 | 0.0000 | 0.0000 | 20 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m2_e0 | homalt | 97.9014 | 96.8815 | 98.9429 | 87.9521 | 466 | 15 | 468 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | * | 95.3280 | 96.1779 | 94.4929 | 89.8327 | 1384 | 55 | 1407 | 82 | 17 | 20.7317 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | het | 94.1271 | 95.8874 | 92.4303 | 90.5506 | 886 | 38 | 928 | 76 | 12 | 15.7895 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 91.3043 | 0.0000 | 0.0000 | 21 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m2_e1 | homalt | 97.8487 | 96.9512 | 98.7629 | 87.9353 | 477 | 15 | 479 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | * | map_l250_m0_e0 | * | 92.5000 | 94.8718 | 90.2439 | 97.6565 | 74 | 4 | 74 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l250_m0_e0 | het | 89.0909 | 92.4528 | 85.9649 | 97.7603 | 49 | 4 | 49 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | * | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3795 | 25 | 0 | 25 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m1_e0 | * | 93.3027 | 95.0820 | 91.5888 | 95.3992 | 290 | 15 | 294 | 27 | 3 | 11.1111 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | het | 90.8928 | 93.6842 | 88.2629 | 95.8219 | 178 | 12 | 188 | 25 | 2 | 8.0000 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 6 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2523 | 106 | 3 | 106 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | * | 93.5413 | 95.4683 | 91.6905 | 95.6635 | 316 | 15 | 320 | 29 | 3 | 10.3448 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | het | 91.3070 | 94.2857 | 88.5106 | 96.0027 | 198 | 12 | 208 | 27 | 2 | 7.4074 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 6 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.7441 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | * | 93.5790 | 95.4955 | 91.7379 | 95.7583 | 318 | 15 | 322 | 29 | 3 | 10.3448 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | het | 91.3456 | 94.3128 | 88.5593 | 96.0927 | 199 | 12 | 209 | 27 | 2 | 7.4074 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 6 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.8546 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_siren | * | 97.2258 | 97.5978 | 96.8567 | 81.1585 | 7232 | 178 | 7426 | 241 | 69 | 28.6307 | |
| cchapple-custom | INDEL | * | map_siren | het | 96.6860 | 97.7595 | 95.6358 | 82.3179 | 4407 | 101 | 4821 | 220 | 56 | 25.4545 | |
| cchapple-custom | INDEL | * | map_siren | hetalt | 0.0000 | 88.6640 | 0.0000 | 0.0000 | 219 | 28 | 0 | 0 | 0 | ||