PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75151-75200 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 95.8333 | 100.0000 | 92.0000 | 95.4710 | 22 | 0 | 23 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 94.4444 | 100.0000 | 89.4737 | 95.7207 | 14 | 0 | 17 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_siren | * | 94.5230 | 93.5167 | 95.5513 | 80.9225 | 476 | 33 | 494 | 23 | 10 | 43.4783 | |
| cchapple-custom | INDEL | D6_15 | map_siren | het | 94.8724 | 94.6429 | 95.1031 | 81.6462 | 265 | 15 | 369 | 19 | 8 | 42.1053 | |
| cchapple-custom | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 86.8687 | 0.0000 | 0.0000 | 86 | 13 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_siren | homalt | 96.5251 | 96.1538 | 96.8992 | 78.3557 | 125 | 5 | 125 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | segdup | * | 96.8734 | 95.8115 | 97.9592 | 92.6811 | 183 | 8 | 192 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | segdup | het | 98.3425 | 96.7391 | 100.0000 | 93.1979 | 89 | 3 | 144 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 89.7959 | 0.0000 | 0.0000 | 44 | 5 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 90.7308 | 50 | 0 | 48 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.7778 | 17 | 0 | 17 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 10 | 0 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | * | * | 97.5144 | 96.5971 | 98.4493 | 68.4041 | 6160 | 217 | 6666 | 105 | 85 | 80.9524 | |
| cchapple-custom | INDEL | I16_PLUS | * | het | 98.4654 | 97.8293 | 99.1099 | 69.2948 | 2659 | 59 | 5122 | 46 | 28 | 60.8696 | |
| cchapple-custom | INDEL | I16_PLUS | * | hetalt | 0.0000 | 92.6120 | 0.0000 | 0.0000 | 1943 | 155 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | * | homalt | 98.0326 | 99.8078 | 96.3194 | 65.1446 | 1558 | 3 | 1544 | 59 | 57 | 96.6102 | |
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | * | 97.1576 | 96.1803 | 98.1550 | 66.7729 | 1259 | 50 | 1330 | 25 | 18 | 72.0000 | |
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | het | 97.6379 | 96.5414 | 98.7595 | 67.9804 | 642 | 23 | 1035 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 91.9403 | 0.0000 | 0.0000 | 308 | 27 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 98.0066 | 100.0000 | 96.0912 | 61.8634 | 309 | 0 | 295 | 12 | 11 | 91.6667 | |
| cchapple-custom | INDEL | I16_PLUS | HG002compoundhet | * | 94.6047 | 92.5805 | 96.7194 | 51.6153 | 1984 | 159 | 2506 | 85 | 81 | 95.2941 | |
| cchapple-custom | INDEL | I16_PLUS | HG002compoundhet | het | 93.8692 | 89.3617 | 98.8556 | 50.9675 | 42 | 5 | 2505 | 29 | 26 | 89.6552 | |
| cchapple-custom | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 92.6421 | 0.0000 | 0.0000 | 1939 | 154 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 3.4483 | 100.0000 | 1.7544 | 69.5187 | 3 | 0 | 1 | 56 | 55 | 98.2143 | |
| cchapple-custom | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 75.5556 | 11 | 1 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 68.9655 | 9 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7108 | 93.6893 | 95.7547 | 87.1903 | 193 | 13 | 203 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0545 | 96.8421 | 97.2678 | 86.8156 | 92 | 3 | 178 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 88.3721 | 0.0000 | 0.0000 | 76 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.5926 | 100.0000 | 86.2069 | 89.1386 | 25 | 0 | 25 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5410 | 96.4067 | 98.7024 | 79.1406 | 1100 | 41 | 1217 | 16 | 12 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5000 | 95.8716 | 99.1848 | 78.2549 | 418 | 18 | 1095 | 9 | 5 | 55.5556 | |