PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
75051-75100 / 86044 show all
cchapple-customINDELI6_15map_l150_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI6_15map_l150_m1_e0homalt
100.0000
100.0000
100.0000
93.7500
70700
cchapple-customINDELI6_15map_l150_m2_e0*
89.3617
84.0000
95.4545
95.6262
2142110
0.0000
cchapple-customINDELI6_15map_l150_m2_e0het
82.1333
73.3333
93.3333
95.9350
1141410
0.0000
cchapple-customINDELI6_15map_l150_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI6_15map_l150_m2_e0homalt
100.0000
100.0000
100.0000
94.7761
70700
cchapple-customINDELI6_15map_l150_m2_e1*
90.1961
85.1852
95.8333
95.4111
2342310
0.0000
cchapple-customINDELI6_15map_l150_m2_e1het
83.3333
75.0000
93.7500
95.8225
1241510
0.0000
cchapple-customINDELI6_15map_l150_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI6_15map_l150_m2_e1homalt
100.0000
100.0000
100.0000
94.2857
80800
cchapple-customINDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
99.1379
10100
cchapple-customINDELI6_15map_l250_m0_e0het
0.0000
100.0000
00000
cchapple-customINDELI6_15map_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.6667
10100
cchapple-customINDELI6_15map_l250_m1_e0*
76.9231
71.4286
83.3333
97.7099
52510
0.0000
cchapple-customINDELI6_15map_l250_m1_e0het
57.1429
50.0000
66.6667
98.4615
22210
0.0000
cchapple-customINDELI6_15map_l250_m1_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
95.5224
30300
cchapple-customINDELI6_15map_l250_m2_e0*
80.0000
75.0000
85.7143
97.6027
62610
0.0000
cchapple-customINDELI6_15map_l250_m2_e0het
66.6667
60.0000
75.0000
98.0952
32310
0.0000
cchapple-customINDELI6_15map_l250_m2_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
96.3415
30300
cchapple-customINDELI6_15map_l250_m2_e1*
80.0000
75.0000
85.7143
97.6898
62610
0.0000
cchapple-customINDELI6_15map_l250_m2_e1het
66.6667
60.0000
75.0000
98.1735
32310
0.0000
cchapple-customINDELI6_15map_l250_m2_e1hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
96.4286
30300
cchapple-customINDELI6_15map_siren*
96.0396
95.4098
96.6777
83.6945
29114291104
40.0000
cchapple-customINDELI6_15map_sirenhet
96.0059
95.8042
96.2085
84.5308
137620382
25.0000
cchapple-customINDELI6_15map_sirenhetalt
0.0000
91.6667
0.0000
0.0000
666000
cchapple-customINDELI6_15map_sirenhomalt
97.7778
97.7778
97.7778
81.3278
8828822
100.0000
cchapple-customINDELI6_15segdup*
99.1468
98.8571
99.4382
92.6110
173217710
0.0000
cchapple-customINDELI6_15segduphet
99.6255
100.0000
99.2537
92.8034
83013310
0.0000
cchapple-customINDELI6_15segduphetalt
0.0000
97.7778
0.0000
0.0000
441000
cchapple-customINDELI6_15segduphomalt
98.9247
97.8723
100.0000
91.9561
4614400
cchapple-customINDELI6_15segdupwithalt*
0.0000
100.0000
00000
cchapple-customINDELI6_15segdupwithalthet
0.0000
100.0000
00000
cchapple-customINDELI6_15segdupwithalthetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI6_15segdupwithalthomalt
0.0000
100.0000
00000
cchapple-customINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
57.5758
1301400
cchapple-customINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
54.1667
701100
cchapple-customINDELI6_15tech_badpromotershetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
30300
cchapple-customSNP***
99.8448
99.8832
99.8063
20.8246
3051052356730495575917726
12.2697
cchapple-customSNP**het
99.7822
99.8765
99.6880
23.4490
1871274231318719215859675
11.5207
cchapple-customSNP**hetalt
0.0000
99.6556
0.0000
0.0000
8683000
cchapple-customSNP**homalt
99.9445
99.8940
99.9951
16.2464
1178910125111776365851
87.9310
cchapple-customSNP*HG002complexvar*
99.8003
99.6796
99.9214
18.6735
7519642417749599590426
72.2034
cchapple-customSNP*HG002complexvarhet
99.7839
99.6872
99.8808
18.7433
4640411456463256553394
71.2477
cchapple-customSNP*HG002complexvarhetalt
0.0000
99.0323
0.0000
0.0000
3073000
cchapple-customSNP*HG002complexvarhomalt
99.8273
99.6680
99.9871
18.5601
2876169582863433732
86.4865