PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74601-74650 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9091 | 95.9594 | 97.8778 | 43.6515 | 13228 | 557 | 14482 | 314 | 297 | 94.5860 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.7128 | 97.1052 | 98.3282 | 43.4107 | 3757 | 112 | 11704 | 199 | 182 | 91.4573 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 93.8836 | 0.0000 | 0.0000 | 6677 | 435 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.8007 | 99.6434 | 96.0249 | 44.6210 | 2794 | 10 | 2778 | 115 | 115 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9914 | 97.4553 | 98.5335 | 44.4822 | 10800 | 282 | 11758 | 175 | 165 | 94.2857 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4377 | 98.0757 | 98.8024 | 44.1799 | 3211 | 63 | 9405 | 114 | 104 | 91.2281 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 96.0463 | 0.0000 | 0.0000 | 5223 | 215 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6381 | 99.8312 | 97.4731 | 45.6429 | 2366 | 4 | 2353 | 61 | 61 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.0372 | 96.1312 | 97.9605 | 45.4439 | 14213 | 572 | 15466 | 322 | 303 | 94.0994 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.8606 | 97.3459 | 98.3807 | 45.3197 | 4328 | 118 | 12333 | 203 | 185 | 91.1330 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 93.8389 | 0.0000 | 0.0000 | 6732 | 442 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.9533 | 99.6209 | 96.3407 | 45.9172 | 3153 | 12 | 3133 | 119 | 118 | 99.1597 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.0337 | 96.0444 | 98.0437 | 49.4938 | 16972 | 699 | 18343 | 366 | 341 | 93.1694 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6874 | 96.9552 | 98.4307 | 49.3864 | 5668 | 178 | 14614 | 233 | 211 | 90.5579 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 93.7213 | 0.0000 | 0.0000 | 7553 | 506 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.0553 | 99.6017 | 96.5562 | 49.9027 | 3751 | 15 | 3729 | 133 | 130 | 97.7444 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.6494 | 97.0713 | 98.2344 | 36.6573 | 9181 | 277 | 10015 | 180 | 172 | 95.5556 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1374 | 97.6583 | 98.6213 | 37.9185 | 2669 | 64 | 8083 | 113 | 105 | 92.9204 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 95.7041 | 0.0000 | 0.0000 | 4567 | 205 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0973 | 99.5904 | 96.6483 | 30.9022 | 1945 | 8 | 1932 | 67 | 67 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.4118 | 79.2549 | 90.2866 | 33.4746 | 936 | 245 | 1134 | 122 | 120 | 98.3607 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.9187 | 79.7297 | 93.1494 | 34.9226 | 118 | 30 | 979 | 72 | 70 | 97.2222 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 75.9174 | 0.0000 | 0.0000 | 662 | 210 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.9390 | 96.8944 | 75.6098 | 24.9084 | 156 | 5 | 155 | 50 | 50 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6709 | 98.4962 | 98.8462 | 81.0219 | 262 | 4 | 257 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4624 | 100.0000 | 98.9305 | 81.6667 | 155 | 0 | 185 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 91.8919 | 0.0000 | 0.0000 | 34 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6394 | 98.6486 | 98.6301 | 79.1429 | 73 | 1 | 72 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.3241 | 82.4561 | 84.2105 | 99.3544 | 47 | 10 | 48 | 9 | 1 | 11.1111 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.8131 | 80.9524 | 82.6923 | 99.2172 | 34 | 8 | 43 | 9 | 1 | 11.1111 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.9091 | 83.3333 | 100.0000 | 99.7713 | 5 | 1 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7204 | 98.1014 | 99.3473 | 45.8867 | 3617 | 70 | 3653 | 24 | 22 | 91.6667 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6497 | 97.9456 | 99.3640 | 46.2896 | 1621 | 34 | 2812 | 18 | 16 | 88.8889 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 97.2927 | 0.0000 | 0.0000 | 1150 | 32 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4104 | 99.5294 | 99.2916 | 44.4954 | 846 | 4 | 841 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.2014 | 93.3840 | 97.0909 | 41.7126 | 1228 | 87 | 1335 | 40 | 33 | 82.5000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6679 | 92.1212 | 97.3595 | 41.8524 | 304 | 26 | 1143 | 31 | 26 | 83.8710 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 92.4338 | 0.0000 | 0.0000 | 733 | 60 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4606 | 99.4792 | 95.5224 | 40.8824 | 191 | 1 | 192 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4269 | 99.0751 | 99.7811 | 30.6904 | 1714 | 16 | 1823 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1404 | 98.4353 | 99.8557 | 31.3181 | 692 | 11 | 1384 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 99.3151 | 0.0000 | 0.0000 | 580 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6602 | 99.7743 | 99.5465 | 28.6408 | 442 | 1 | 439 | 2 | 2 | 100.0000 | |