PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74501-74550 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.7738 | 96.4912 | 99.0909 | 85.2646 | 220 | 8 | 218 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 95.7666 | 96.8545 | 94.7028 | 87.9645 | 739 | 24 | 733 | 41 | 6 | 14.6341 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 94.8879 | 97.0817 | 92.7911 | 88.6129 | 499 | 15 | 502 | 39 | 4 | 10.2564 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.6904 | 96.2810 | 99.1416 | 86.1310 | 233 | 9 | 231 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | * | 95.7815 | 96.7866 | 94.7970 | 87.9805 | 753 | 25 | 747 | 41 | 6 | 14.6341 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | het | 94.8726 | 96.9349 | 92.8962 | 88.6523 | 506 | 16 | 510 | 39 | 4 | 10.2564 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 8 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.7471 | 96.3710 | 99.1632 | 86.0885 | 239 | 9 | 237 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 94.6237 | 95.6522 | 93.6170 | 97.1567 | 44 | 2 | 44 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 92.5373 | 93.9394 | 91.1765 | 97.1878 | 31 | 2 | 31 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0721 | 13 | 0 | 13 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 94.8142 | 97.0760 | 92.6554 | 94.4234 | 166 | 5 | 164 | 13 | 1 | 7.6923 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 93.1984 | 97.2973 | 89.4309 | 94.7682 | 108 | 3 | 110 | 13 | 1 | 7.6923 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 93.4386 | 55 | 2 | 54 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 94.6665 | 97.2826 | 92.1875 | 94.6711 | 179 | 5 | 177 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 93.0049 | 97.5207 | 88.8889 | 94.9457 | 118 | 3 | 120 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 93.8841 | 58 | 2 | 57 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 94.6948 | 97.2973 | 92.2280 | 94.7767 | 180 | 5 | 178 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 93.0589 | 97.5410 | 88.9706 | 95.0292 | 119 | 3 | 121 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.0563 | 58 | 2 | 57 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_siren | * | 97.4907 | 98.1298 | 96.8600 | 78.7253 | 3463 | 66 | 3424 | 111 | 14 | 12.6126 | |
| cchapple-custom | INDEL | D1_5 | map_siren | het | 97.0834 | 98.5946 | 95.6177 | 79.2698 | 2245 | 32 | 2291 | 105 | 10 | 9.5238 | |
| cchapple-custom | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 86.9048 | 0.0000 | 0.0000 | 73 | 11 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_siren | homalt | 98.7468 | 98.0308 | 99.4732 | 77.4812 | 1145 | 23 | 1133 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | D1_5 | segdup | * | 99.4547 | 99.1840 | 99.7268 | 94.3229 | 1094 | 9 | 1095 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | segdup | het | 99.1458 | 98.6994 | 99.5962 | 94.5834 | 683 | 9 | 740 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 52 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6878 | 359 | 0 | 355 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9913 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 41.9355 | 18 | 1 | 18 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 47.0588 | 7 | 1 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 35.7143 | 9 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | * | * | 97.8623 | 97.1869 | 98.5472 | 48.1960 | 25358 | 734 | 26658 | 393 | 348 | 88.5496 | |
| cchapple-custom | INDEL | D6_15 | * | het | 98.5018 | 98.2488 | 98.7561 | 48.6146 | 11389 | 203 | 20403 | 257 | 215 | 83.6576 | |
| cchapple-custom | INDEL | D6_15 | * | hetalt | 0.0000 | 93.7852 | 0.0000 | 0.0000 | 7666 | 508 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | * | homalt | 98.7463 | 99.6364 | 97.8720 | 46.7949 | 6303 | 23 | 6255 | 136 | 133 | 97.7941 | |
| cchapple-custom | INDEL | D6_15 | HG002complexvar | * | 96.6422 | 95.3791 | 97.9391 | 52.4803 | 5057 | 245 | 5085 | 107 | 98 | 91.5888 | |
| cchapple-custom | INDEL | D6_15 | HG002complexvar | het | 97.1892 | 96.5064 | 97.8818 | 52.6751 | 3011 | 109 | 3974 | 86 | 77 | 89.5349 | |
| cchapple-custom | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 87.4630 | 0.0000 | 0.0000 | 886 | 127 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | HG002complexvar | homalt | 98.6845 | 99.2301 | 98.1449 | 51.7682 | 1160 | 9 | 1111 | 21 | 21 | 100.0000 | |