PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74251-74300 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I6_15 | HG002complexvar | * | 97.5496 | 96.4942 | 98.6284 | 54.8042 | 4624 | 168 | 4746 | 66 | 60 | 90.9091 | |
| cchapple-custom | INDEL | I6_15 | HG002complexvar | het | 98.1734 | 97.1975 | 99.1692 | 56.5725 | 2289 | 66 | 3581 | 30 | 25 | 83.3333 | |
| cchapple-custom | INDEL | I6_15 | HG002complexvar | hetalt | 0.0000 | 92.3957 | 0.0000 | 0.0000 | 1130 | 93 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | HG002complexvar | homalt | 98.1176 | 99.2586 | 97.0025 | 48.4991 | 1205 | 9 | 1165 | 36 | 35 | 97.2222 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | * | 95.3148 | 93.5278 | 97.1715 | 34.8185 | 8208 | 568 | 9894 | 288 | 283 | 98.2639 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | het | 96.1554 | 93.2692 | 99.2258 | 33.4003 | 194 | 14 | 9869 | 77 | 72 | 93.5065 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 0.0000 | 93.5106 | 0.0000 | 0.0000 | 7983 | 554 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | homalt | 19.1571 | 100.0000 | 10.5932 | 65.6477 | 31 | 0 | 25 | 211 | 211 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I6_15 | func_cds | * | 97.7008 | 97.6744 | 97.7273 | 35.2941 | 42 | 1 | 43 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.8383 | 98.3607 | 97.3214 | 62.5418 | 60 | 1 | 109 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 92.1569 | 0.0000 | 0.0000 | 47 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 53.6082 | 45 | 0 | 45 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.4812 | 86.9565 | 92.1569 | 51.8868 | 40 | 6 | 47 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.6066 | 75.0000 | 94.4444 | 59.5506 | 6 | 2 | 34 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 84.0000 | 0.0000 | 0.0000 | 21 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 11.7647 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 77.9661 | 82.1429 | 74.1935 | 94.2056 | 23 | 5 | 23 | 8 | 1 | 12.5000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 83.4019 | 84.2105 | 82.6087 | 94.8081 | 16 | 3 | 19 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 91.3043 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 79.8809 | 79.3103 | 80.4598 | 91.6985 | 69 | 18 | 70 | 17 | 9 | 52.9412 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 84.8574 | 86.9565 | 82.8571 | 91.8320 | 40 | 6 | 58 | 12 | 7 | 58.3333 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 65.3846 | 0.0000 | 0.0000 | 17 | 9 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 75.0000 | 80.0000 | 70.5882 | 91.0995 | 12 | 3 | 12 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 79.4406 | 78.8889 | 80.0000 | 92.4306 | 71 | 19 | 72 | 18 | 9 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 83.6445 | 85.4167 | 81.9444 | 92.5620 | 41 | 7 | 59 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 65.3846 | 0.0000 | 0.0000 | 17 | 9 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 76.4706 | 81.2500 | 72.2222 | 91.8552 | 13 | 3 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6787 | 78.3505 | 81.0526 | 92.1811 | 76 | 21 | 77 | 18 | 9 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.6663 | 86.2745 | 83.1169 | 92.2457 | 44 | 7 | 64 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 63.3333 | 0.0000 | 0.0000 | 19 | 11 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 76.4706 | 81.2500 | 72.2222 | 91.8919 | 13 | 3 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 94.6429 | 12 | 0 | 12 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 86.9565 | 100.0000 | 76.9231 | 94.3478 | 9 | 0 | 10 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 91.2281 | 96.2963 | 86.6667 | 94.5055 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.1704 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 95.1923 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.9219 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 89.6552 | 92.8571 | 86.6667 | 95.3125 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.5075 | 95.0000 | 84.6154 | 95.0570 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |