PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74151-74200 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6263 | 91.4498 | 98.0315 | 68.7192 | 246 | 23 | 249 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0465 | 88.2353 | 98.4127 | 67.1447 | 45 | 6 | 248 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 92.1659 | 0.0000 | 0.0000 | 200 | 17 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1368 | 98.7619 | 99.5146 | 57.7002 | 1037 | 13 | 1025 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2714 | 98.9362 | 99.6089 | 56.7644 | 465 | 5 | 764 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 98.0831 | 0.0000 | 0.0000 | 307 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2452 | 99.2509 | 99.2395 | 60.2118 | 265 | 2 | 261 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 88.0000 | 95.6522 | 52.0833 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.6716 | 50.0000 | 95.6522 | 50.0000 | 1 | 1 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 91.3043 | 0.0000 | 0.0000 | 21 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 96.5832 | 96.6851 | 96.4815 | 84.1223 | 525 | 18 | 521 | 19 | 5 | 26.3158 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6165 | 96.0123 | 95.2239 | 86.1513 | 313 | 13 | 319 | 16 | 3 | 18.7500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.3062 | 98.0769 | 98.5366 | 79.1242 | 204 | 4 | 202 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 97.2897 | 97.0127 | 97.5684 | 82.3852 | 1299 | 40 | 1284 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | het | 96.5366 | 96.6538 | 96.4198 | 83.9921 | 751 | 26 | 781 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 40 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.7338 | 98.0695 | 99.4071 | 79.0129 | 508 | 10 | 503 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 97.3100 | 97.0029 | 97.6190 | 83.7387 | 1327 | 41 | 1312 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 96.5400 | 96.5952 | 96.4848 | 85.2941 | 766 | 27 | 796 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 40 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.7651 | 98.1168 | 99.4220 | 80.4520 | 521 | 10 | 516 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 97.3625 | 97.0609 | 97.6659 | 83.8268 | 1354 | 41 | 1339 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 96.6133 | 96.6667 | 96.5599 | 85.3595 | 783 | 27 | 814 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 91.1111 | 0.0000 | 0.0000 | 41 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.7858 | 98.1481 | 99.4318 | 80.5811 | 530 | 10 | 525 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 95.3077 | 95.1613 | 95.4545 | 87.8309 | 295 | 15 | 294 | 14 | 3 | 21.4286 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 94.0580 | 94.2708 | 93.8462 | 89.3033 | 181 | 11 | 183 | 12 | 2 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.7974 | 97.3684 | 98.2301 | 84.0395 | 111 | 3 | 111 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 96.8476 | 96.5060 | 97.1917 | 84.9670 | 801 | 29 | 796 | 23 | 6 | 26.0870 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 95.7437 | 95.6790 | 95.8084 | 86.4814 | 465 | 21 | 480 | 21 | 5 | 23.8095 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 94.1176 | 0.0000 | 0.0000 | 16 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.6094 | 97.8593 | 99.3711 | 81.7451 | 320 | 7 | 316 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 96.8251 | 96.3827 | 97.2716 | 86.3349 | 826 | 31 | 820 | 23 | 6 | 26.0870 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 95.7357 | 95.5734 | 95.8984 | 87.7950 | 475 | 22 | 491 | 21 | 5 | 23.8095 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6662 | 97.9472 | 99.3958 | 83.2320 | 334 | 7 | 329 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 96.8730 | 96.4368 | 97.3131 | 86.4514 | 839 | 31 | 833 | 23 | 6 | 26.0870 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 95.8267 | 95.6693 | 95.9847 | 87.8457 | 486 | 22 | 502 | 21 | 5 | 23.8095 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6740 | 97.9592 | 99.3994 | 83.4739 | 336 | 7 | 331 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 94.8440 | 94.3182 | 95.3757 | 91.3802 | 166 | 10 | 165 | 8 | 2 | 25.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 93.4271 | 93.3962 | 93.4579 | 92.5952 | 99 | 7 | 100 | 7 | 1 | 14.2857 | |