PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
73851-73900 / 86044 show all
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7220
97.5815
99.8894
72.8284
9282390311
100.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.0168
97.1706
98.8778
83.5902
23016723792722
81.4815
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.5586
96.7635
98.3668
86.6207
14654915662621
80.7692
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8722
97.8873
99.8771
70.5393
8341881311
100.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.1305
99.0001
99.2612
79.9407
10693108107488026
32.5000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8536
98.8377
98.8695
82.8620
68038069097925
31.6456
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6282
99.2848
99.9740
70.9201
388728383911
100.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.8701
99.3283
98.4162
75.2675
453953074542573160
8.2079
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.3696
99.2268
97.5271
78.9884
284902222863272657
7.8512
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
100.0000
0.0000
0.0000
150000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7342
99.4993
99.9702
64.1818
16890851679353
60.0000
cchapple-customSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.2941
99.0714
99.5178
62.5456
96029096994729
61.7021
cchapple-customSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.1314
98.9416
99.3219
67.8823
61706662984325
58.1395
cchapple-customSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.5931
99.3054
99.8825
45.7630
343124340144
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_diTR_51to200*
84.6154
78.5714
91.6667
96.0656
3393330
0.0000
cchapple-customSNP*lowcmp_SimpleRepeat_diTR_51to200het
78.2039
70.3704
88.0000
96.8983
1982230
0.0000
cchapple-customSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
96.5517
93.3333
100.0000
89.9083
1411100
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8835
99.8894
99.8776
53.9498
171581917135219
42.8571
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8601
99.8647
99.8556
55.3095
110691511065167
43.7500
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9260
99.9343
99.9177
51.2440
60844607052
40.0000
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.0953
99.8075
98.3931
40.1515
18148351818629710
3.3670
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.6015
99.7463
97.4826
44.5639
1140429114622969
3.0405
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
50000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9110
99.9851
30.4766
67396672411
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_51to200*
90.7796
85.3147
96.9925
91.6614
1222112942
50.0000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_51to200het
89.5954
83.3333
96.8750
92.7928
85179331
33.3333
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
93.6380
90.2439
97.2973
85.9316
3743611
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.6397
99.6465
99.6329
33.8966
7329267327278
29.6296
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.5568
99.6967
99.4174
37.3360
4602144607278
29.6296
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7987
99.5982
100.0000
27.0777
272711272000
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_51to200*
80.0000
66.6667
100.0000
97.1591
63500
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_51to200het
83.3333
71.4286
100.0000
97.2973
52400
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
96.4286
11100
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000