PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73601-73650 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m2_e1 | homalt | 98.1938 | 96.4643 | 99.9865 | 68.8251 | 7421 | 272 | 7418 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l250_m0_e0 | * | 95.9625 | 94.5985 | 97.3664 | 93.5930 | 1296 | 74 | 1294 | 35 | 13 | 37.1429 | |
| cchapple-custom | SNP | ti | map_l250_m0_e0 | het | 95.0637 | 93.8972 | 96.2596 | 94.5783 | 877 | 57 | 875 | 34 | 12 | 35.2941 | |
| cchapple-custom | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | map_l250_m0_e0 | homalt | 97.8972 | 96.1009 | 99.7619 | 89.4393 | 419 | 17 | 419 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l250_m1_e0 | * | 96.3982 | 95.8943 | 96.9074 | 89.5799 | 4391 | 188 | 4387 | 140 | 38 | 27.1429 | |
| cchapple-custom | SNP | ti | map_l250_m1_e0 | het | 95.4232 | 95.5189 | 95.3277 | 91.2575 | 2835 | 133 | 2836 | 139 | 37 | 26.6187 | |
| cchapple-custom | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l250_m1_e0 | homalt | 98.2278 | 96.5775 | 99.9356 | 83.5174 | 1552 | 55 | 1551 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | * | 96.4779 | 96.0264 | 96.9336 | 90.1381 | 4809 | 199 | 4805 | 152 | 41 | 26.9737 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | het | 95.5856 | 95.7898 | 95.3823 | 91.6456 | 3117 | 137 | 3119 | 151 | 40 | 26.4901 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l250_m2_e0 | homalt | 98.1670 | 96.4551 | 99.9407 | 84.8332 | 1687 | 62 | 1686 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l250_m2_e1 | * | 96.4747 | 96.0008 | 96.9534 | 90.2115 | 4873 | 203 | 4869 | 153 | 42 | 27.4510 | |
| cchapple-custom | SNP | ti | map_l250_m2_e1 | het | 95.5838 | 95.7563 | 95.4120 | 91.7154 | 3159 | 140 | 3161 | 152 | 41 | 26.9737 | |
| cchapple-custom | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l250_m2_e1 | homalt | 98.1620 | 96.4447 | 99.9415 | 84.8962 | 1709 | 63 | 1708 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_siren | * | 98.4477 | 98.4784 | 98.4171 | 57.2072 | 98828 | 1527 | 98796 | 1589 | 367 | 23.0963 | |
| cchapple-custom | SNP | ti | map_siren | het | 98.0329 | 98.5813 | 97.4906 | 61.4640 | 61497 | 885 | 61538 | 1584 | 362 | 22.8535 | |
| cchapple-custom | SNP | ti | map_siren | hetalt | 0.0000 | 98.2456 | 0.0000 | 0.0000 | 56 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_siren | homalt | 99.1409 | 98.3094 | 99.9866 | 47.3567 | 37275 | 641 | 37258 | 5 | 5 | 100.0000 | |
| cchapple-custom | SNP | ti | segdup | * | 99.6040 | 99.8311 | 99.3779 | 91.2552 | 19504 | 33 | 19490 | 122 | 16 | 13.1148 | |
| cchapple-custom | SNP | ti | segdup | het | 99.4449 | 99.8088 | 99.0837 | 92.7182 | 12007 | 23 | 12003 | 111 | 5 | 4.5045 | |
| cchapple-custom | SNP | ti | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | segdup | homalt | 99.8600 | 99.8668 | 99.8533 | 87.0523 | 7495 | 10 | 7487 | 11 | 11 | 100.0000 | |
| cchapple-custom | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | tech_badpromoters | * | 99.4152 | 100.0000 | 98.8372 | 43.4211 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 47.0588 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 38.8060 | 41 | 0 | 41 | 0 | 0 | ||
| cchapple-custom | SNP | tv | * | * | 99.7746 | 99.8756 | 99.6738 | 23.8746 | 968484 | 1206 | 967637 | 3167 | 250 | 7.8939 | |
| cchapple-custom | SNP | tv | * | het | 99.6701 | 99.8702 | 99.4708 | 26.9512 | 590928 | 768 | 591553 | 3147 | 233 | 7.4039 | |
| cchapple-custom | SNP | tv | * | hetalt | 0.0000 | 99.6556 | 0.0000 | 0.0000 | 868 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | * | homalt | 99.9396 | 99.8847 | 99.9947 | 18.4432 | 376688 | 435 | 376084 | 20 | 17 | 85.0000 | |
| cchapple-custom | SNP | tv | HG002complexvar | * | 99.7805 | 99.6506 | 99.9108 | 21.2813 | 245292 | 860 | 244113 | 218 | 153 | 70.1835 | |
| cchapple-custom | SNP | tv | HG002complexvar | het | 99.7615 | 99.6630 | 99.8602 | 21.5432 | 150223 | 508 | 149954 | 210 | 146 | 69.5238 | |
| cchapple-custom | SNP | tv | HG002complexvar | hetalt | 0.0000 | 99.0323 | 0.0000 | 0.0000 | 307 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | HG002complexvar | homalt | 99.8120 | 99.6331 | 99.9915 | 20.8601 | 94762 | 349 | 94159 | 8 | 7 | 87.5000 | |
| cchapple-custom | SNP | tv | HG002compoundhet | * | 99.1131 | 98.7784 | 99.4501 | 47.4326 | 8814 | 109 | 9224 | 51 | 34 | 66.6667 | |
| cchapple-custom | SNP | tv | HG002compoundhet | het | 98.8352 | 98.5020 | 99.1705 | 51.5239 | 4603 | 70 | 5978 | 50 | 33 | 66.0000 | |
| cchapple-custom | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 99.6520 | 0.0000 | 0.0000 | 859 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | HG002compoundhet | homalt | 99.4506 | 98.9374 | 99.9692 | 37.6656 | 3352 | 36 | 3246 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||