PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
73551-73600 / 86044 show all
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtimap_l100_m0_e0*
96.8619
96.6377
97.0872
70.6515
2103973221032631173
27.4168
cchapple-customSNPtimap_l100_m0_e0het
96.2084
96.8676
95.5581
74.9532
1354543813553630172
27.3016
cchapple-customSNPtimap_l100_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
140000
cchapple-customSNPtimap_l100_m0_e0homalt
98.0662
96.2182
99.9866
56.4787
7480294747911
100.0000
cchapple-customSNPtimap_l100_m1_e0*
97.7073
97.6424
97.7722
66.9622
468011130467831066270
25.3283
cchapple-customSNPtimap_l100_m1_e0het
97.1277
97.7690
96.4947
71.3539
29274668292901064268
25.1880
cchapple-customSNPtimap_l100_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
290000
cchapple-customSNPtimap_l100_m1_e0homalt
98.6915
97.4276
99.9886
54.9898
174984621749322
100.0000
cchapple-customSNPtimap_l100_m2_e0*
97.7249
97.6634
97.7865
68.9717
478171144478001082275
25.4159
cchapple-customSNPtimap_l100_m2_e0het
97.1509
97.7892
96.5210
73.0558
29945677299631080273
25.2778
cchapple-customSNPtimap_l100_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
300000
cchapple-customSNPtimap_l100_m2_e0homalt
98.7027
97.4493
99.9888
57.8553
178424671783722
100.0000
cchapple-customSNPtimap_l100_m2_e1*
97.7339
97.6781
97.7898
68.9863
483361149483161092276
25.2747
cchapple-customSNPtimap_l100_m2_e1het
97.1612
97.8036
96.5271
73.0715
30280680302961090274
25.1376
cchapple-customSNPtimap_l100_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
310000
cchapple-customSNPtimap_l100_m2_e1homalt
98.7103
97.4640
99.9889
57.8502
180254691802022
100.0000
cchapple-customSNPtimap_l125_m0_e0*
96.3333
95.8549
96.8166
76.6174
1223352912226402120
29.8507
cchapple-customSNPtimap_l125_m0_e0het
95.6528
96.1152
95.1947
80.1979
79423217944401119
29.6758
cchapple-customSNPtimap_l125_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
80000
cchapple-customSNPtimap_l125_m0_e0homalt
97.6182
95.3685
99.9767
63.8992
4283208428211
100.0000
cchapple-customSNPtimap_l125_m1_e0*
97.0755
96.9422
97.2092
72.6876
2843889728423816227
27.8186
cchapple-customSNPtimap_l125_m1_e0het
96.3594
97.1203
95.6103
76.7136
1774052617751815226
27.7301
cchapple-customSNPtimap_l125_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
240000
cchapple-customSNPtimap_l125_m1_e0homalt
98.2873
96.6410
99.9906
60.9405
106743711067211
100.0000
cchapple-customSNPtimap_l125_m2_e0*
97.1171
96.9958
97.2387
74.5555
2934990929334833230
27.6110
cchapple-customSNPtimap_l125_m2_e0het
96.4167
97.1816
95.6637
78.2290
1834453218355832229
27.5240
cchapple-customSNPtimap_l125_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
240000
cchapple-customSNPtimap_l125_m2_e0homalt
98.3080
96.6808
99.9909
63.9160
109813771097911
100.0000
cchapple-customSNPtimap_l125_m2_e1*
97.1333
97.0166
97.2504
74.6114
2965791229639838230
27.4463
cchapple-customSNPtimap_l125_m2_e1het
96.4352
97.1970
95.6851
78.2763
1855253518561837229
27.3596
cchapple-customSNPtimap_l125_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
240000
cchapple-customSNPtimap_l125_m2_e1homalt
98.3230
96.7097
99.9910
63.9684
110813771107811
100.0000
cchapple-customSNPtimap_l150_m0_e0*
95.9984
95.3950
96.6095
81.4997
7499362749426377
29.2776
cchapple-customSNPtimap_l150_m0_e0het
95.1985
95.5072
94.8918
84.4938
4868229486726276
29.0076
cchapple-customSNPtimap_l150_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customSNPtimap_l150_m0_e0homalt
97.5139
95.1829
99.9619
70.3118
2628133262711
100.0000
cchapple-customSNPtimap_l150_m1_e0*
96.7874
96.6213
96.9540
76.8102
1904666619034598159
26.5886
cchapple-customSNPtimap_l150_m1_e0het
95.9987
96.7583
95.2510
80.3175
1196940111974597158
26.4657
cchapple-customSNPtimap_l150_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
150000
cchapple-customSNPtimap_l150_m1_e0homalt
98.1515
96.3832
99.9858
66.0349
7062265706011
100.0000
cchapple-customSNPtimap_l150_m2_e0*
96.8497
96.6995
97.0004
78.4535
1983567719823613163
26.5905
cchapple-customSNPtimap_l150_m2_e0het
96.0807
96.8481
95.3254
81.6490
1247540612480612162
26.4706
cchapple-customSNPtimap_l150_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
150000
cchapple-customSNPtimap_l150_m2_e0homalt
98.1821
96.4417
99.9864
68.7543
7345271734311
100.0000
cchapple-customSNPtimap_l150_m2_e1*
96.8601
96.7186
97.0020
78.5397
2004368020028619164
26.4943
cchapple-customSNPtimap_l150_m2_e1het
96.0905
96.8652
95.3281
81.7323
1260740812610618163
26.3754